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Almeida, Angela; Freitas, Rosa; Calisto, Vania; Esteves, Valdemar I; Schneider, Rudolf J; Soares, Amadeu M V M; Figueira, Etelvina; Campos, Bruno; Barata, Carlos (2018): Seawater carbonate chemistry and the biochemical and transcriptome responses of the clam Ruditapes philippinarum [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.944568

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Abstract:
Several works evaluated the toxicity of pharmaceutical drugs and climate related changes in invertebrates but few explored the combined effects of both stressors, namely considering their mode of action (MoA). Carbamazepine (CBZ) and cetirizine (CTZ) are pharmaceutical drugs detected in the environment and the toxicity derived from the combined effects of these drugs with ocean acidification (OA) is poorly explored. Thus, the present study investigated the biochemical parameters related to an oxidative stress response and the transcription of genes related to the MoA of CBZ (1.0 μg/L) and CTZ (0.6 μg/L) in the clam Ruditapes philippinarum chronically exposed (28 days) to control (7.8) and low (7.5) pH conditions. The results obtained showed that despite the clams accumulated both drugs, at low pH the clams exposed to CTZ decreased drug concentration and BCF values (CTZ uptake: 2.0 ± 0.5 ng/g fresh weight; BCF: 3.8 ± 0.9) in comparison with clams exposed to control pH (CTZ uptake: 2.9 ± 0.3 ng/g fresh weight; BCF: 5.5 ± 0.6). No oxidative stress was induced by the exposure to CBZ or CTZ at each pH level, but the transcription of several genes related with the MoA (neurotransmission, immunity and biomineralization) was altered by low pH, drug exposure and the combination of both stressors. At both pH conditions, CBZ increased the transcription of GABA receptor gene (neurotransmission) and CTZ led to a decrease of Perlucin gene (biomineralization) transcription. The transcription of MyD88 gene (immunity) decreased at low pH (7.5) combined with drug exposure (CBZ or CTZ). Thus, it was highlighted that the interaction of drug exposure and low pH conditions can change bivalves' sensitivity to drugs or alter drugs toxicity.
Keyword(s):
Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Brackish waters; Gene expression (incl. proteomics); Laboratory experiment; Mollusca; North Atlantic; Organic toxins; Other metabolic rates; Other studied parameter or process; Ruditapes philippinarum; Single species; Temperate
Supplement to:
Almeida, Angela; Freitas, Rosa; Calisto, Vania; Esteves, Valdemar I; Schneider, Rudolf J; Soares, Amadeu M V M; Figueira, Etelvina; Campos, Bruno; Barata, Carlos (2018): Effects of carbamazepine and cetirizine under an ocean acidification scenario on the biochemical and transcriptome responses of the clam Ruditapes philippinarum. Environmental Pollution, 235, 857-868, https://doi.org/10.1016/j.envpol.2017.12.121
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-05-24.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeFreitas, Rosastudy
2Species, unique identificationSpecies UIDFreitas, Rosa
3Species, unique identification (URI)Species UID (URI)Freitas, Rosa
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Freitas, Rosa
5Experiment durationExp durationdaysFreitas, Rosa
6TreatmentTreatFreitas, Rosa
7TreatmentTreatFreitas, Rosa
8Drug concentration per fresh massDrug/fmng/gFreitas, Rosain clams tissues
9Drug concentration per fresh mass, standard deviationDrug/fm std dev±Freitas, Rosain clams tissues
10Bioconcentration factorBCFL/kgFreitas, Rosa
11Bioconcentration factor, standard deviationBCF std dev±Freitas, Rosa
12Energy transport system activity, per fresh massETS/fmnmol/g/minFreitas, Rosa
13Electron transport system activity of oyxgen, standard deviationETS std dev±Freitas, Rosa
14Lipid peroxidation, per fresh massLPO/fmnmol/gFreitas, Rosa
15Lipid peroxidation, standard deviationLPO std dev±Freitas, Rosa
16Total glutathione peroxidase activity, per fresh massGPX/fmU/gFreitas, Rosa
17Total glutathione peroxidase activity, per fresh mass, standard deviationGPX/fm std dev±Freitas, Rosa
18mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaCyp3
19mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaCyp3
20mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaGABA
21mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaGABA
22mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaMyD88
23mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaMyD88
24mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaIkappa B
25mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaIkappa B
26mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaTNF
27mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaTNF
28mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaCathepsin
29mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaCathepsin
30mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaPerlucin
31mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaPerlucin
32mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaSLC4
33mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaSLC4
34Temperature, waterTemp°CFreitas, Rosa
35Temperature, water, standard deviationTemp std dev±Freitas, Rosa
36SalinitySalFreitas, Rosa
37Salinity, standard deviationSal std dev±Freitas, Rosa
38pHpHFreitas, RosaPotentiometricNBS scale
39pH, standard deviationpH std dev±Freitas, RosaPotentiometricNBS scale
40Alkalinity, totalATµmol/kgFreitas, RosaPotentiometric titration
41Alkalinity, total, standard deviationAT std dev±Freitas, RosaPotentiometric titration
42Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFreitas, RosaCalculated using CO2SYS
43Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Freitas, RosaCalculated using CO2SYS
44Carbonate ion[CO3]2-µmol/kgFreitas, RosaCalculated using CO2SYS
45Carbonate ion, standard deviation[CO3]2- std dev±Freitas, RosaCalculated using CO2SYS
46Bicarbonate ion[HCO3]-µmol/kgFreitas, RosaCalculated using CO2SYS
47Bicarbonate ion, standard deviation[HCO3]- std dev±Freitas, RosaCalculated using CO2SYS
48Calcite saturation stateOmega CalFreitas, RosaCalculated using CO2SYS
49Calcite saturation state, standard deviationOmega Cal std dev±Freitas, RosaCalculated using CO2SYS
50Aragonite saturation stateOmega ArgFreitas, RosaCalculated using CO2SYS
51Aragonite saturation state, standard deviationOmega Arg std dev±Freitas, RosaCalculated using CO2SYS
52Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
54Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
55Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
57Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
59Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
61Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
478 data points

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