Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Almeida, Angela; Freitas, Rosa; Calisto, Vania; Esteves, Valdemar I; Schneider, Rudolf J; Soares, Amadeu M V M; Figueira, Etelvina; Campos, Bruno; Barata, Carlos (2018): Seawater carbonate chemistry and the biochemical and transcriptome responses of the clam Ruditapes philippinarum [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.944568

Always quote citation above when using data! You can download the citation in several formats below.

RIS CitationBibTeX Citation

Abstract:
Several works evaluated the toxicity of pharmaceutical drugs and climate related changes in invertebrates but few explored the combined effects of both stressors, namely considering their mode of action (MoA). Carbamazepine (CBZ) and cetirizine (CTZ) are pharmaceutical drugs detected in the environment and the toxicity derived from the combined effects of these drugs with ocean acidification (OA) is poorly explored. Thus, the present study investigated the biochemical parameters related to an oxidative stress response and the transcription of genes related to the MoA of CBZ (1.0 μg/L) and CTZ (0.6 μg/L) in the clam Ruditapes philippinarum chronically exposed (28 days) to control (7.8) and low (7.5) pH conditions. The results obtained showed that despite the clams accumulated both drugs, at low pH the clams exposed to CTZ decreased drug concentration and BCF values (CTZ uptake: 2.0 ± 0.5 ng/g fresh weight; BCF: 3.8 ± 0.9) in comparison with clams exposed to control pH (CTZ uptake: 2.9 ± 0.3 ng/g fresh weight; BCF: 5.5 ± 0.6). No oxidative stress was induced by the exposure to CBZ or CTZ at each pH level, but the transcription of several genes related with the MoA (neurotransmission, immunity and biomineralization) was altered by low pH, drug exposure and the combination of both stressors. At both pH conditions, CBZ increased the transcription of GABA receptor gene (neurotransmission) and CTZ led to a decrease of Perlucin gene (biomineralization) transcription. The transcription of MyD88 gene (immunity) decreased at low pH (7.5) combined with drug exposure (CBZ or CTZ). Thus, it was highlighted that the interaction of drug exposure and low pH conditions can change bivalves' sensitivity to drugs or alter drugs toxicity.
Keyword(s):
Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Brackish waters; Gene expression (incl. proteomics); Laboratory experiment; Mollusca; North Atlantic; Organic toxins; Other metabolic rates; Other studied parameter or process; Ruditapes philippinarum; Single species; Temperate
Supplement to:
Almeida, Angela; Freitas, Rosa; Calisto, Vania; Esteves, Valdemar I; Schneider, Rudolf J; Soares, Amadeu M V M; Figueira, Etelvina; Campos, Bruno; Barata, Carlos (2018): Effects of carbamazepine and cetirizine under an ocean acidification scenario on the biochemical and transcriptome responses of the clam Ruditapes philippinarum. Environmental Pollution, 235, 857-868, https://doi.org/10.1016/j.envpol.2017.12.121
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-05-24.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeFreitas, Rosastudy
Species, unique identificationSpecies UIDFreitas, Rosa
Species, unique identification (URI)Species UID (URI)Freitas, Rosa
Species, unique identification (Semantic URI)Species UID (Semantic URI)Freitas, Rosa
Experiment durationExp durationdaysFreitas, Rosa
TreatmentTreatFreitas, Rosa
TreatmentTreatFreitas, Rosa
Drug concentration per fresh massDrug/fmng/gFreitas, Rosain clams tissues
Drug concentration per fresh mass, standard deviationDrug/fm std dev±Freitas, Rosain clams tissues
10 Bioconcentration factorBCFL/kgFreitas, Rosa
11 Bioconcentration factor, standard deviationBCF std dev±Freitas, Rosa
12 Energy transport system activity, per fresh massETS/fmnmol/g/minFreitas, Rosa
13 Electron transport system activity of oyxgen, standard deviationETS std dev±Freitas, Rosa
14 Lipid peroxidation, per fresh massLPO/fmnmol/gFreitas, Rosa
15 Lipid peroxidation, standard deviationLPO std dev±Freitas, Rosa
16 Total glutathione peroxidase activity, per fresh massGPX/fmU/gFreitas, Rosa
17 Total glutathione peroxidase activity, per fresh mass, standard deviationGPX/fm std dev±Freitas, Rosa
18 mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaCyp3
19 mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaCyp3
20 mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaGABA
21 mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaGABA
22 mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaMyD88
23 mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaMyD88
24 mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaIkappa B
25 mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaIkappa B
26 mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaTNF
27 mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaTNF
28 mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaCathepsin
29 mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaCathepsin
30 mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaPerlucin
31 mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaPerlucin
32 mRNA levels, relatively to the elongation factormRNA levelsFreitas, RosaSLC4
33 mRNA levels, relatively to the elongation factor, standard deviationmRNA levels std dev±Freitas, RosaSLC4
34 Temperature, waterTemp°CFreitas, Rosa
35 Temperature, water, standard deviationTemp std dev±Freitas, Rosa
36 SalinitySalFreitas, Rosa
37 Salinity, standard deviationSal std dev±Freitas, Rosa
38 pHpHFreitas, RosaPotentiometricNBS scale
39 pH, standard deviationpH std dev±Freitas, RosaPotentiometricNBS scale
40 Alkalinity, totalATµmol/kgFreitas, RosaPotentiometric titration
41 Alkalinity, total, standard deviationAT std dev±Freitas, RosaPotentiometric titration
42 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFreitas, RosaCalculated using CO2SYS
43 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Freitas, RosaCalculated using CO2SYS
44 Carbonate ion[CO3]2-µmol/kgFreitas, RosaCalculated using CO2SYS
45 Carbonate ion, standard deviation[CO3]2- std dev±Freitas, RosaCalculated using CO2SYS
46 Bicarbonate ion[HCO3]-µmol/kgFreitas, RosaCalculated using CO2SYS
47 Bicarbonate ion, standard deviation[HCO3]- std dev±Freitas, RosaCalculated using CO2SYS
48 Calcite saturation stateOmega CalFreitas, RosaCalculated using CO2SYS
49 Calcite saturation state, standard deviationOmega Cal std dev±Freitas, RosaCalculated using CO2SYS
50 Aragonite saturation stateOmega ArgFreitas, RosaCalculated using CO2SYS
51 Aragonite saturation state, standard deviationOmega Arg std dev±Freitas, RosaCalculated using CO2SYS
52 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
54 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
55 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
57 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
59 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
61 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
478 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species UID

Species UID (URI)

Species UID (Semantic URI)

Exp duration [days]

Treat

Treat

Drug/fm [ng/g]
(in clams tissues)

Drug/fm std dev [±]
(in clams tissues)
10 
BCF [L/kg]
11 
BCF std dev [±]
12 
ETS/fm [nmol/g/min]
13 
ETS std dev [±]
14 
LPO/fm [nmol/g]
15 
LPO std dev [±]
16 
GPX/fm [U/g]
17 
GPX/fm std dev [±]
18 
mRNA levels []
(Cyp3)
19 
mRNA levels std dev [±]
(Cyp3)
20 
mRNA levels []
(GABA)
21 
mRNA levels std dev [±]
(GABA)
22 
mRNA levels []
(MyD88)
23 
mRNA levels std dev [±]
(MyD88)
24 
mRNA levels []
(Ikappa B)
25 
mRNA levels std dev [±]
(Ikappa B)
26 
mRNA levels []
(TNF)
27 
mRNA levels std dev [±]
(TNF)
28 
mRNA levels []
(Cathepsin)
29 
mRNA levels std dev [±]
(Cathepsin)
30 
mRNA levels []
(Perlucin)
31 
mRNA levels std dev [±]
(Perlucin)
32 
mRNA levels []
(SLC4)
33 
mRNA levels std dev [±]
(SLC4)
34 
Temp [°C]
35 
Temp std dev [±]
36 
Sal
37 
Sal std dev [±]
38 
pH
(NBS scale, Potentiometric)
39 
pH std dev [±]
(NBS scale, Potentiometric)
40 
AT [µmol/kg]
(Potentiometric titration)
41 
AT std dev [±]
(Potentiometric titration)
42 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
43 
pCO2 std dev [±]
(Calculated using CO2SYS)
44 
[CO3]2- [µmol/kg]
(Calculated using CO2SYS)
45 
[CO3]2- std dev [±]
(Calculated using CO2SYS)
46 
[HCO3]- [µmol/kg]
(Calculated using CO2SYS)
47 
[HCO3]- std dev [±]
(Calculated using CO2SYS)
48 
Omega Cal
(Calculated using CO2SYS)
49 
Omega Cal std dev [±]
(Calculated using CO2SYS)
50 
Omega Arg
(Calculated using CO2SYS)
51 
Omega Arg std dev [±]
(Calculated using CO2SYS)
52 
CSC flag
(Calculated using seacarb afte...)
53 
pH
(total scale, Calculated using...)
54 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
55 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
56 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
57 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
58 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
59 
DIC [µmol/kg]
(Calculated using seacarb afte...)
60 
Omega Arg
(Calculated using seacarb afte...)
61 
Omega Cal
(Calculated using seacarb afte...)
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Control pHCBZ1.940.571.650.4818.230.2625.580.708.170.032311.2630.19347.77118.46147.775.781961.8528.193.700.241.790.31268.0416.23452.57454.151973.99141.982132.202.273.61
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Control pHCTZ2.930.335.450.6317.830.2725.670.838.150.032266.8423.28474.7935.81133.665.281945.6035.073.390.132.130.08268.0117.05470.17471.821952.83131.612101.502.103.34
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Lowered pHCBZ pH 7.51.790.361.460.3216.730.1025.420.657.620.042380.9653.771766.53194.5045.803.072271.6757.691.160.080.730.05267.4968.721831.861838.372277.8643.522390.100.691.10
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Lowered pHCTZ pH 7.51.950.513.810.8916.370.1125.830.197.500.122414.6740.682554.32872.3035.889.492333.4044.380.910.240.570.08267.3791.772425.752434.412333.6134.222459.600.540.87
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Control pHCTL64.2717.9347.156.360.030.013.000.500.100.036.960.9970.2310.0828.765.520.180.06462.43282.781.240.2017.710.2426.081.578.110.092292.369.96529.98121.87140.705.821984.5265.313.550.151.530.09267.9818.70514.88516.681992.87125.532137.102.003.18
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Control pHCBZ66.3321.6943.687.620.040.011.190.350.240.115.881.4130.988.1311.575.330.270.11576.67299.713.421.2018.230.2625.580.708.170.032311.2630.19347.77118.46147.775.781961.8528.193.700.241.790.31268.0416.23452.57454.151973.99141.982132.202.273.61
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Control pHCTZ67.0013.6748.693.960.030.011.040.260.020.006.741.7634.117.452.721.270.030.0146.0123.421.110.1917.830.2725.670.838.150.032266.8423.28474.7935.81133.665.281945.6035.073.390.132.130.08268.0117.05470.17471.821952.83131.612101.502.103.34
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Lowered pHpH 7.568.6023.9450.264.950.040.010.960.270.060.014.390.3935.453.091.720.360.060.01500.10233.531.290.3517.090.1225.751.307.630.082393.7276.321898.19428.8045.538.202284.9895.501.150.210.720.13267.5066.751801.911808.292285.6645.582398.000.721.16
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Lowered pHCBZ pH 7.593.6624.2846.553.450.030.011.080.260.410.174.430.5923.801.915.480.810.390.18623.23276.040.960.1916.730.1025.420.657.620.042380.9653.771766.53194.5045.803.072271.6757.691.160.080.730.05267.4968.721831.861838.372277.8643.522390.100.691.10
laboratoryRuditapes philippinarummarinespecies.orgurn:lsid:marinespecies.org:taxname:23175028Lowered pHCTZ pH 7.562.4114.9546.863.740.040.010.860.160.200.073.540.7522.183.575.292.120.140.05128.65118.331.240.2816.370.1125.830.197.500.122414.6740.682554.32872.3035.889.492333.4044.380.910.240.570.08267.3791.772425.752434.412333.6134.222459.600.540.87