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Moreira, Anthony; Figueira, Etelvina; Mestre, Nélia C; Schrama, Denise; Soares, Amadeu M V M; Freitas, Rosa; Bebianno, Maria João (2018): Seawater carbonate chemistry and Arsenic accumulation of Crassostrea angulata and Crassostrea gigas [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.943191

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Abstract:
Proteomic analysis was performed to compare the effects of Arsenic (As), seawater acidification (Low pH) and the combination of both stressors (Low pH + As) on Crassostrea angulata and Crassostrea gigas juveniles in the context of global environmental change. This study aimed to elucidate if two closely related Crassostrea species respond similarly to these environmental stressors, considering both single and combined exposures, to infer if the simultaneous exposure to both stressors induced a differentiated response. Identification of the most important differentially expressed proteins between conditions revealed marked differences in the response of each species towards single and combined exposures, evidencing species-related differences towards each experimental condition. Moreover, protein alterations observed in the combined exposure (Low pH + As) were substantially different from those observed in single exposures. Identified proteins and their putative biological functions revealed an array of modes of action in each condition. Among the most important, those involved in cellular structure (Actin, Atlastin, Severin, Gelsolin, Coronin) and extracellular matrix modulation (Ependymin, Tight junction ZO-1, Neprilysin) were strongly regulated, although in different exposure conditions and species. Data also revealed differences regarding metabolic modulation capacity (ATP beta, Enolase, Aconitate hydratase) and oxidative stress response (Aldehyde dehydrogenase, Lactoylglutathione, Retinal dehydrogenase) of the species, which also depended on single or combined exposures, illustrating a different response capacity of both oyster species to the presence of multiple stressors. Interestingly, alterations of piRNA abundance in C. angulata suggested genome reconfiguration in response to multiple stressors, likely an important mode of action related to adaptive evolution mechanisms previously unknown to oyster species, which requires further investigation. Our findings provide a deeper insight into the complexity of C. angulata and C. gigas responses to environmental stress at the proteome level, evidencing different capacities to endure abiotic changes, with relevance regarding the ecophysiological fitness of the species and competitive advantages in a changing environment.
Keyword(s):
Animalia; Benthic animals; Benthos; Brackish waters; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea angulata; Crassostrea gigas; Inorganic toxins; Laboratory experiment; Mollusca; North Atlantic; Other metabolic rates; Single species; Temperate
Supplement to:
Moreira, Anthony; Figueira, Etelvina; Mestre, Nélia C; Schrama, Denise; Soares, Amadeu M V M; Freitas, Rosa; Bebianno, Maria João (2018): Impacts of the combined exposure to seawater acidification and arsenic on the proteome of Crassostrea angulata and Crassostrea gigas. Aquatic Toxicology, 203, 117-129, https://doi.org/10.1016/j.aquatox.2018.07.021
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-04-11.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeFreitas, Rosastudy
2SpeciesSpeciesFreitas, Rosa
3Registration number of speciesReg spec noFreitas, RosaWoRMS Aphia ID
4Uniform resource locator/link to referenceURL refFreitas, Rosa
5Experiment durationExp durationdaysFreitas, Rosa
6TreatmentTreatFreitas, Rosa
7ArsenicAsmg/kgFreitas, Rosaper wet weight
8Arsenic, standard deviationAs std dev±Freitas, Rosaper wet weight
9Temperature, waterTemp°CFreitas, Rosa
10SalinitySalFreitas, Rosa
11Salinity, standard deviationSal std dev±Freitas, Rosa
12pHpHFreitas, RosaPotentiometricNBS scale
13pH, standard deviationpH std dev±Freitas, RosaPotentiometricNBS scale
14Alkalinity, totalATµmol/kgFreitas, RosaPotentiometric titration
15Alkalinity, total, standard deviationAT std dev±Freitas, RosaPotentiometric titration
16Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFreitas, RosaCalculated using CO2SYS
17Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Freitas, RosaCalculated using CO2SYS
18Bicarbonate ion[HCO3]-µmol/kgFreitas, RosaCalculated using CO2SYS
19Bicarbonate ion, standard deviation[HCO3]- std dev±Freitas, RosaCalculated using CO2SYS
20Carbonate ion[CO3]2-µmol/kgFreitas, RosaCalculated using CO2SYS
21Carbonate ion, standard deviation[CO3]2- std dev±Freitas, RosaCalculated using CO2SYS
22Aragonite saturation stateOmega ArgFreitas, RosaCalculated using CO2SYS
23Aragonite saturation state, standard deviationOmega Arg std dev±Freitas, RosaCalculated using CO2SYS
24Calcite saturation stateOmega CalFreitas, RosaCalculated using CO2SYS
25Calcite saturation state, standard deviationOmega Cal std dev±Freitas, RosaCalculated using CO2SYS
26Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
28Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
280 data points

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