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Moreira, Anthony; Figueira, Etelvina; Mestre, Nélia C; Schrama, Denise; Soares, Amadeu M V M; Freitas, Rosa; Bebianno, Maria João (2018): Seawater carbonate chemistry and Arsenic accumulation of Crassostrea angulata and Crassostrea gigas [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.943191

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Abstract:
Proteomic analysis was performed to compare the effects of Arsenic (As), seawater acidification (Low pH) and the combination of both stressors (Low pH + As) on Crassostrea angulata and Crassostrea gigas juveniles in the context of global environmental change. This study aimed to elucidate if two closely related Crassostrea species respond similarly to these environmental stressors, considering both single and combined exposures, to infer if the simultaneous exposure to both stressors induced a differentiated response. Identification of the most important differentially expressed proteins between conditions revealed marked differences in the response of each species towards single and combined exposures, evidencing species-related differences towards each experimental condition. Moreover, protein alterations observed in the combined exposure (Low pH + As) were substantially different from those observed in single exposures. Identified proteins and their putative biological functions revealed an array of modes of action in each condition. Among the most important, those involved in cellular structure (Actin, Atlastin, Severin, Gelsolin, Coronin) and extracellular matrix modulation (Ependymin, Tight junction ZO-1, Neprilysin) were strongly regulated, although in different exposure conditions and species. Data also revealed differences regarding metabolic modulation capacity (ATP beta, Enolase, Aconitate hydratase) and oxidative stress response (Aldehyde dehydrogenase, Lactoylglutathione, Retinal dehydrogenase) of the species, which also depended on single or combined exposures, illustrating a different response capacity of both oyster species to the presence of multiple stressors. Interestingly, alterations of piRNA abundance in C. angulata suggested genome reconfiguration in response to multiple stressors, likely an important mode of action related to adaptive evolution mechanisms previously unknown to oyster species, which requires further investigation. Our findings provide a deeper insight into the complexity of C. angulata and C. gigas responses to environmental stress at the proteome level, evidencing different capacities to endure abiotic changes, with relevance regarding the ecophysiological fitness of the species and competitive advantages in a changing environment.
Keyword(s):
Animalia; Benthic animals; Benthos; Brackish waters; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea angulata; Crassostrea gigas; Inorganic toxins; Laboratory experiment; Mollusca; North Atlantic; Other metabolic rates; Single species; Temperate
Supplement to:
Moreira, Anthony; Figueira, Etelvina; Mestre, Nélia C; Schrama, Denise; Soares, Amadeu M V M; Freitas, Rosa; Bebianno, Maria João (2018): Impacts of the combined exposure to seawater acidification and arsenic on the proteome of Crassostrea angulata and Crassostrea gigas. Aquatic Toxicology, 203, 117-129, https://doi.org/10.1016/j.aquatox.2018.07.021
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-04-11.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeFreitas, Rosastudy
SpeciesSpeciesFreitas, Rosa
Registration number of speciesReg spec noFreitas, RosaWoRMS Aphia ID
Uniform resource locator/link to referenceURL refFreitas, Rosa
Experiment durationExp durationdaysFreitas, Rosa
TreatmentTreatFreitas, Rosa
ArsenicAsmg/kgFreitas, Rosaper wet weight
Arsenic, standard deviationAs std dev±Freitas, Rosaper wet weight
Temperature, waterTemp°CFreitas, Rosa
10 SalinitySalFreitas, Rosa
11 Salinity, standard deviationSal std dev±Freitas, Rosa
12 pHpHFreitas, RosaPotentiometricNBS scale
13 pH, standard deviationpH std dev±Freitas, RosaPotentiometricNBS scale
14 Alkalinity, totalATµmol/kgFreitas, RosaPotentiometric titration
15 Alkalinity, total, standard deviationAT std dev±Freitas, RosaPotentiometric titration
16 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFreitas, RosaCalculated using CO2SYS
17 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Freitas, RosaCalculated using CO2SYS
18 Bicarbonate ion[HCO3]-µmol/kgFreitas, RosaCalculated using CO2SYS
19 Bicarbonate ion, standard deviation[HCO3]- std dev±Freitas, RosaCalculated using CO2SYS
20 Carbonate ion[CO3]2-µmol/kgFreitas, RosaCalculated using CO2SYS
21 Carbonate ion, standard deviation[CO3]2- std dev±Freitas, RosaCalculated using CO2SYS
22 Aragonite saturation stateOmega ArgFreitas, RosaCalculated using CO2SYS
23 Aragonite saturation state, standard deviationOmega Arg std dev±Freitas, RosaCalculated using CO2SYS
24 Calcite saturation stateOmega CalFreitas, RosaCalculated using CO2SYS
25 Calcite saturation state, standard deviationOmega Cal std dev±Freitas, RosaCalculated using CO2SYS
26 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
28 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
280 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no
(WoRMS Aphia ID)

URL ref

Exp duration [days]

Treat

As [mg/kg]
(per wet weight)

As std dev [±]
(per wet weight)

Temp [°C]
10 
Sal
11 
Sal std dev [±]
12 
pH
(NBS scale, Potentiometric)
13 
pH std dev [±]
(NBS scale, Potentiometric)
14 
AT [µmol/kg]
(Potentiometric titration)
15 
AT std dev [±]
(Potentiometric titration)
16 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
17 
pCO2 std dev [±]
(Calculated using CO2SYS)
18 
[HCO3]- [µmol/kg]
(Calculated using CO2SYS)
19 
[HCO3]- std dev [±]
(Calculated using CO2SYS)
20 
[CO3]2- [µmol/kg]
(Calculated using CO2SYS)
21 
[CO3]2- std dev [±]
(Calculated using CO2SYS)
22 
Omega Arg
(Calculated using CO2SYS)
23 
Omega Arg std dev [±]
(Calculated using CO2SYS)
24 
Omega Cal
(Calculated using CO2SYS)
25 
Omega Cal std dev [±]
(Calculated using CO2SYS)
26 
CSC flag
(Calculated using seacarb afte...)
27 
pH
(total scale, Calculated using...)
28 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
29 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
30 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
31 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
32 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
33 
DIC [µmol/kg]
(Calculated using seacarb afte...)
34 
Omega Arg
(Calculated using seacarb afte...)
35 
Omega Cal
(Calculated using seacarb afte...)
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Control1.0300.17173017.990.0220015858621174349102.84.72.50.101.60.07267.8621.07580.57582.631771.1192.231884.401.452.28
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28As exposure4.5900.42173017.980.0419965957713173946102.85.92.50.101.60.09267.8521.56594.12596.221771.2190.141882.901.422.22
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Low pH1.3100.11173017.570.0120406417328419336342.71.71.10.040.70.03267.4460.861677.271683.211944.4638.482043.800.610.95
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Low pH + As5.3901.10173017.580.0220276216546219205543.83.21.10.080.70.05267.4559.051627.451633.211929.8939.062028.000.610.96
laboratoryCrassostrea angulata (mollusk)146900marinespecies.org28Control1.2500.14173018.010.0320465457634177649110.25.22.70.101.80.09267.8820.47564.23566.231802.1798.261920.901.552.42
laboratoryCrassostrea angulata (mollusk)146900marinespecies.org28As exposure2.8800.28173017.990.0221034159928183037110.24.92.70.101.70.08267.8622.17610.91613.071863.5097.031982.701.532.39
laboratoryCrassostrea angulata (mollusk)146900marinespecies.org28Low pH1.1600.39173017.590.03208761163311019705646.43.61.10.080.70.05267.4659.351635.631641.421985.3241.132085.800.651.01
laboratoryCrassostrea angulata (mollusk)146900marinespecies.org28Low pH + As2.9900.51173017.590.0221294417349920154246.42.21.10.050.70.03267.4660.571669.291675.202025.6741.962128.200.661.04