Citation:

PANGAEA.930483

Name: Benthic community structure in surface sediments from Isfjorden, Svalbard
Published: 2021-04-19
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Arctic; bacterial community composition; CARD-FISH; marine sediment; Svalbard; TOC

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Keyword(s):

Arctic; bacterial community composition; CARD-FISH; marine sediment; Svalbard; TOC

Related to:

Miksch, Sebastian; Meiners, Mirja; Meyerdierks, Anke; Probandt, David; Wegener, Gunter; Titschack, Jürgen; Jensen, Maria A; Ellrott, Andreas; Amann, Rudolf; Knittel, Katrin (2021): Bacterial communities in temperate and polar coastal sands are seasonally stable. ISME Communications, 1(1), https://doi.org/10.1038/s43705-021-00028-w

Coverage:

Median Latitude: 78.104325 * Median Longitude: 14.375950 * South-bound Latitude: 78.102800 * West-bound Longitude: 14.349600 * North-bound Latitude: 78.106600 * East-bound Longitude: 14.394200

Date/Time Start: 2017-12-20T00:00:00 * Date/Time End: 2019-09-13T00:00:00

Event(s):

ISF_05 * Latitude: 78.106600 * Longitude: 14.349600 * Location: Svalbard, Isfjorden * Method/Device: van Veen Grab (VGRAB)

ISF_06 * Latitude: 78.104600 * Longitude: 14.378300 * Location: Isfjord, Svalbard * Method/Device: van Veen Grab (VGRAB)

ISF_07 * Latitude: 78.103300 * Longitude: 14.381700 * Location: Isfjord, Svalbard * Method/Device: van Veen Grab (VGRAB)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Knittel, Katrin
2	Latitude of event	Latitude		Knittel, Katrin
3	Longitude of event	Longitude		Knittel, Katrin
4	Sample code/label	Sample label		Knittel, Katrin
5	DATE/TIME	Date/Time		Knittel, Katrin		Geocode
6	DEPTH, sediment/rock	Depth sed	m	Knittel, Katrin		Geocode
7	Depth, top/min	Depth top	m	Knittel, Katrin
8	Depth, bottom/max	Depth bot	m	Knittel, Katrin
9	Temperature, in rock/sediment	t	°C	Miksch, Sebastian
10	ELEVATION	Elevation	m a.s.l.	Knittel, Katrin		Geocode
11	DEPTH, water	Depth water	m	Miksch, Sebastian		Geocode
12	Salinity, absolute	Sal	mg/l	Miksch, Sebastian		given in ppm
13	Chlorophyll a	Chl a	µg/l	Miksch, Sebastian	Cyclops-7, submersible sensor, Turner Designs, San Jose, USA
14	Carbon, organic, total	TOC	%	Wegener, Gunter
15	Carbon, total	TC	%	Wegener, Gunter
16	Nitrogen, organic, total	TON	%	Wegener, Gunter
17	Nitrogen, total	TN	%	Wegener, Gunter
18	Prokaryotes, cell abundance	Prok cell abund	10⁸ #/cm³	Knittel, Katrin	Epifluorescence microscopy after DAPI staining
19	Bacteria, cell abundance, targeted by oligonucleotide FISH probe EUB338-I-III	EUB338-I-III	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
20	Gammaproteobacteria, cell abundance, targeted by oligonucleotide FISH probe GAM42a	GAM42a	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
21	Bacteroidota, cell abundance, targeted by oligonucleotide FISH probe CF319a	CF319a	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
22	Verrucomicrobiota, cell abundance, targeted by oligonucleotide FISH probe EUB338-III	EUB338-III	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
23	Desulfobacterota, cell abundance, targeted by oligonucleotide FISH probe DELTA495a-c	DELTA495a-c	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
24	Planctomycetota, cell abundance, targeted by oligonucleotide FISH probe PLA46	PLA46	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
25	Desulfobacterota of the Desulfosarcina/Desulfococcus branch cell abundance, targeted by oligonucleotide FISH probe DSS658	DSS658	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
26	Actinomarinales, cell abundance, targeted by oligonucleotide FISH probe ACM1218	ACM1218	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
27	Microtrichales, cell abundance, targeted by oligonucleotide FISH probe MIT1218	MIT1218	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
28	Accession number, genetics	Access no gen		Miksch, Sebastian	Sequence read archive; bacteria
29	Inverse Simpson index of diversity	Inv Simpson I		Miksch, Sebastian	Calculated from DADA2 analysis	of bacteria
30	Shannon Diversity Index	H'		Miksch, Sebastian	Calculated from DADA2 analysis	of bacteria

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

547 data points

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