Citation:

PANGAEA.930483

Name: Benthic community structure in surface sediments from Isfjorden, Svalbard
Published: 2021-04-19
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Arctic; bacterial community composition; CARD-FISH; marine sediment; Svalbard; TOC

Always quote citation above when using data! You can download the citation in several formats below.

RIS Citation BibTeX Citation Text Citation Facebook TwitterShow Map Google Earth

Keyword(s):

Arctic; bacterial community composition; CARD-FISH; marine sediment; Svalbard; TOC

Related to:

Miksch, Sebastian; Meiners, Mirja; Meyerdierks, Anke; Probandt, David; Wegener, Gunter; Titschack, Jürgen; Jensen, Maria A; Ellrott, Andreas; Amann, Rudolf; Knittel, Katrin (2021): Bacterial communities in temperate and polar coastal sands are seasonally stable. ISME Communications, 1(1), https://doi.org/10.1038/s43705-021-00028-w

Coverage:

Median Latitude: 78.104325 * Median Longitude: 14.375950 * South-bound Latitude: 78.102800 * West-bound Longitude: 14.349600 * North-bound Latitude: 78.106600 * East-bound Longitude: 14.394200

Date/Time Start: 2017-12-20T00:00:00 * Date/Time End: 2019-09-13T00:00:00

Event(s):

ISF_05 * Latitude: 78.106600 * Longitude: 14.349600 * Location: Svalbard, Isfjorden * Method/Device: van Veen Grab (VGRAB)

ISF_06 * Latitude: 78.104600 * Longitude: 14.378300 * Location: Isfjord, Svalbard * Method/Device: van Veen Grab (VGRAB)

ISF_07 * Latitude: 78.103300 * Longitude: 14.381700 * Location: Isfjord, Svalbard * Method/Device: van Veen Grab (VGRAB)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Knittel, Katrin
2	Latitude of event	Latitude		Knittel, Katrin
3	Longitude of event	Longitude		Knittel, Katrin
4	Sample code/label	Sample label		Knittel, Katrin
5	DATE/TIME	Date/Time		Knittel, Katrin		Geocode
6	DEPTH, sediment/rock	Depth sed	m	Knittel, Katrin		Geocode
7	Depth, top/min	Depth top	m	Knittel, Katrin
8	Depth, bottom/max	Depth bot	m	Knittel, Katrin
9	Temperature, in rock/sediment	t	°C	Miksch, Sebastian
10	ELEVATION	Elevation	m a.s.l.	Knittel, Katrin		Geocode
11	DEPTH, water	Depth water	m	Miksch, Sebastian		Geocode
12	Salinity, absolute	Sal	mg/l	Miksch, Sebastian		given in ppm
13	Chlorophyll a	Chl a	µg/l	Miksch, Sebastian	Cyclops-7, submersible sensor, Turner Designs, San Jose, USA
14	Carbon, organic, total	TOC	%	Wegener, Gunter
15	Carbon, total	TC	%	Wegener, Gunter
16	Nitrogen, organic, total	TON	%	Wegener, Gunter
17	Nitrogen, total	TN	%	Wegener, Gunter
18	Prokaryotes, cell abundance	Prok cell abund	10⁸ #/cm³	Knittel, Katrin	Epifluorescence microscopy after DAPI staining
19	Bacteria, cell abundance, targeted by oligonucleotide FISH probe EUB338-I-III	EUB338-I-III	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
20	Gammaproteobacteria, cell abundance, targeted by oligonucleotide FISH probe GAM42a	GAM42a	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
21	Bacteroidota, cell abundance, targeted by oligonucleotide FISH probe CF319a	CF319a	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
22	Verrucomicrobiota, cell abundance, targeted by oligonucleotide FISH probe EUB338-III	EUB338-III	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
23	Desulfobacterota, cell abundance, targeted by oligonucleotide FISH probe DELTA495a-c	DELTA495a-c	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
24	Planctomycetota, cell abundance, targeted by oligonucleotide FISH probe PLA46	PLA46	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
25	Desulfobacterota of the Desulfosarcina/Desulfococcus branch cell abundance, targeted by oligonucleotide FISH probe DSS658	DSS658	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
26	Actinomarinales, cell abundance, targeted by oligonucleotide FISH probe ACM1218	ACM1218	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
27	Microtrichales, cell abundance, targeted by oligonucleotide FISH probe MIT1218	MIT1218	10⁸ #/cm³	Knittel, Katrin	Catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
28	Accession number, genetics	Access no gen		Miksch, Sebastian	Sequence read archive; bacteria
29	Inverse Simpson index of diversity	Inv Simpson I		Miksch, Sebastian	Calculated from DADA2 analysis	of bacteria
30	Shannon Diversity Index	H'		Miksch, Sebastian	Calculated from DADA2 analysis	of bacteria

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

547 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 Latitude	3 Longitude	4 Sample label	5 Date/Time	6 Depth sed [m]	7 Depth top [m]	8 Depth bot [m]	9 t [°C]	10 Elevation [m a.s.l.]	11 Depth water [m]	12 Sal [mg/l]	13 Chl a [µg/l]	14 TOC [%]	15 TC [%]	16 TON [%]	17 TN [%]	18 Prok cell abund [10⁸ #/cm³]	19 EUB338-I-III [10⁸ #/cm³]	20 GAM42a [10⁸ #/cm³]	21 CF319a [10⁸ #/cm³]	22 EUB338-III [10⁸ #/cm³]	23 DELTA495a-c [10⁸ #/cm³]	24 PLA46 [10⁸ #/cm³]	25 DSS658 [10⁸ #/cm³]	26 ACM1218 [10⁸ #/cm³]	27 MIT1218 [10⁸ #/cm³]	28 Access no gen	29 Inv Simpson I	30 H'
ISF_05	78.1066	14.3496	ISF/05S_20171220	2017-12-20	0.01	0	0.02	1.4	8.34				0.222	0.258	0.027	0.032	6.6	5.12	0.66	0.38	0.10	0.98	0.31	0.41	0.33	0.28	insdc:PRJEB42060	109.0	6.5
ISF_06	78.1046	14.3783	ISF/06S_20171220	2017-12-20	0.01	0	0.02	1.4	6.55				0.331	0.298	0.038	0.036	7.5	6.08	1.12	0.38	0.15	1.03	0.40	0.44	0.36	0.39	insdc:PRJEB42060	206.0	6.5
ISF_07	78.1033	14.3817	ISF/07S_20171220	2017-12-20	0.01	0	0.02	1.5	4.07				0.286		0.034		2.6	1.92	0.36	0.21	0.05	0.24	0.07	0.07	0.16	0.14	insdc:PRJEB42060	101.0	6.4
ISF_05	78.1066	14.3496	ISF/05S_20180228	2018-02-28	0.01	0	0.02	-0.6	5.50				0.263	0.471	0.031	0.056	4.0	2.65	0.49	0.19	0.08	0.44	0.09	0.18	0.16	0.15	insdc:PRJEB42060	214.0	6.8
ISF_06	78.1046	14.3783	ISF/06S_20180228	2018-02-28	0.01	0	0.02	-0.6	5.30				0.308	0.421	0.044	0.061	3.0	2.57	0.46	0.27	0.07	0.54	0.15	0.17	0.19	0.15	insdc:PRJEB42060	286.0	7.0
ISF_07	78.1033	14.3817	ISF/07S_20180228	2018-02-28	0.01	0	0.02		2.70				0.433	0.922	0.071	0.107	1.9	1.30	0.22	0.14	0.04	0.14	0.08	0.04	0.09	0.09	insdc:PRJEB42060	117.0	6.6
ISF_05	78.1066	14.3496	ISF/05S_20180501	2018-05-01	0.01	0	0.02	0.6	5.07				0.312	0.343	0.036	0.037	3.6	3.41	0.50	0.34	0.07	0.37	0.22	0.22	0.18	0.16	insdc:PRJEB42060	186.0	6.9
ISF_06	78.1046	14.3783	ISF/06S_20180501	2018-05-01	0.01	0	0.02	0.6	5.78				0.335	0.335	0.040	0.039	4.5	3.98	0.64	0.23	0.09	0.51	0.12	0.18	0.24	0.15	insdc:PRJEB42060	205.0	6.8
ISF_07	78.1033	14.3817	ISF/07S_20180501	2018-05-01	0.01	0	0.02	0.6	4.01				0.279	0.306	0.033	0.035	2.1	1.35	0.24	0.19	0.04	0.20	0.06	0.01	0.12	0.08	insdc:PRJEB42060	254.0	6.9
ISF_23	78.1028	14.3942	ISF/23S_20180501	2018-05-01	0.01	0	0.02	0.6	4.62				0.426	0.629	0.054	0.061	3.3	3.22	0.64	0.36	0.07	0.38	0.08	0.09	0.14	0.14	insdc:PRJEB42060	270.0	6.8
ISF_05	78.1066	14.3496	ISF/05S_20181217	2018-12-17	0.01	0	0.02	0.6	4.85				0.281	0.311	0.033	0.033	2.7	1.91	0.42	0.16	0.05	0.35	0.13	0.12	0.17	0.12	insdc:PRJEB42060	108.0	6.4
ISF_06	78.1046	14.3783	ISF/06S_20181217	2018-12-17	0.01	0	0.02	0.5	4.37				0.292	0.561	0.035	0.042	1.7	1.31	0.16	0.10	0.04	0.17	0.07	0.03	0.10	0.08	insdc:PRJEB42060	118.0	6.6
ISF_07	78.1033	14.3817	ISF/07S_20181217	2018-12-17	0.01	0	0.02	0.5	2.95				0.331	0.354	0.039	0.042	1.7	1.37	0.20	0.15	0.03	0.13	0.04	0.01	0.08	0.08	insdc:PRJEB42060	129.0	6.6
ISF_23	78.1028	14.3942	ISF/23S_20181217	2018-12-17	0.01	0	0.02	0.1	3.89				0.363	0.400	0.039	0.041	1.7	1.33	0.22	0.17	0.04	0.16	0.07	0.03	0.10	0.09	insdc:PRJEB42060	145.0	6.6
ISF_05	78.1066	14.3496	ISF/05S_20190425	2019-04-25	0.01	0	0.02	2.2	4.84				0.334	0.343	0.038	0.042	1.4	1.02	0.18	0.13	0.02	0.13	0.04	0.05	0.07	0.07	insdc:PRJEB42060	186.0	6.8
ISF_06	78.1046	14.3783	ISF/06S_20190425	2019-04-25	0.01	0	0.02	1.9	4.84				0.333	0.369	0.038	0.041	1.2	0.79	0.14	0.07	0.02	0.16	0.07	0.05	0.07	0.05	insdc:PRJEB42060	144.0	6.4
ISF_07	78.1033	14.3817	ISF/07S_20190425	2019-04-25	0.01	0	0.02	2.0	2.48				0.414	0.393	0.046	0.045	0.8	0.61	0.08	0.05	0.01	0.05	0.01	0.01	0.06	0.05	insdc:PRJEB42060	71.0	5.8
ISF_23	78.1028	14.3942	ISF/23S_20190425	2019-04-25	0.01	0	0.02	2.1	3.90				0.358	0.494	0.043	0.050	1.2	1.12	0.15	0.12	0.02	0.13	0.04	0.03	0.08	0.08	insdc:PRJEB42060	189.0	6.7
ISF_05	78.1066	14.3496	ISF/05S_20190913	2019-09-13	0.01	0	0.02	4.5	6.14				0.456	0.512	0.052	0.059	12.5	10.42	1.35	1.83	0.44	1.12	0.49	0.31	0.47	0.43	insdc:PRJEB42060	328.0	7.1
ISF_06	78.1046	14.3783	ISF/06S_20190913	2019-09-13	0.01	0	0.02	4.6	6.25				0.714	0.797	0.077	0.088	7.1	5.43	0.90	1.04	0.28	0.46	0.30	0.03	0.22	0.19	insdc:PRJEB42060	302.0	7.1
ISF_07	78.1033	14.3817	ISF/07S_20190913	2019-09-13	0.01	0	0.02	4.5	2.70				0.532	0.516	0.057	0.056	2.3	2.22	0.30	0.24	0.06	0.12	0.09	0.02	0.13	0.09	insdc:PRJEB42060	58.0	6.0
ISF_23	78.1028	14.3942	ISF/23S_20190913	2019-09-13	0.01	0	0.02	4.6	5.20				0.897	0.895	0.092	0.088	5.6	4.20	0.52	0.89	0.23	0.29	0.22	0.00	0.19	0.14	insdc:PRJEB42060	91.0	6.7
ISF_05	78.1066	14.3496	ISF/05W_20171220	2017-12-20						0.15	35.0
ISF_06	78.1046	14.3783	ISF/06W_20171220	2017-12-20						0.15
ISF_07	78.1033	14.3817	ISF/07W_20171220	2017-12-20						0.15
ISF_05	78.1066	14.3496	ISF/05W_20180228	2018-02-28						0.15																		5.2	5.2
ISF_06	78.1046	14.3783	ISF/06W_20180228	2018-02-28						0.15	34.0
ISF_07	78.1033	14.3817	ISF/07W_20180228	2018-02-28						0.15																		5.3	5.3
ISF_05	78.1066	14.3496	ISF/05W_20180501	2018-05-01				0.9		0.15	33.0																	3.4	3.4
ISF_06	78.1046	14.3783	ISF/06W_20180501	2018-05-01				0.8		0.15	34.0
ISF_07	78.1033	14.3817	ISF/07W_20180501	2018-05-01				0.8		0.15	35.0																	3.1	3.1
ISF_23	78.1028	14.3942	ISF/23W_20180501	2018-05-01				0.8		0.15	33.0																	3.7	3.7
ISF_05	78.1066	14.3496	ISF/05W_20181217	2018-12-17						0.15	35.0	0.35																4.7	4.7
ISF_06	78.1046	14.3783	ISF/06W_20181217	2018-12-17						0.15	33.0	0.35																4.9	4.9
ISF_07	78.1033	14.3817	ISF/07W_20181217	2018-12-17						0.15		0.38																4.8	4.8
ISF_23	78.1028	14.3942	ISF/23W_20181217	2018-12-17						0.15	35.0
ISF_05	78.1066	14.3496	ISF/05W_20190425	2019-04-25						0.15	35.0	8.00																4.1	4.1
ISF_06	78.1046	14.3783	ISF/06W_20190425	2019-04-25				2.0		0.15	35.0	6.25																4.5	4.5
ISF_07	78.1033	14.3817	ISF/07W_20190425	2019-04-25				2.0		0.15	35.0	6.75																4.3	4.3
ISF_23	78.1028	14.3942	ISF/23W_20190425	2019-04-25						0.15	35.0																	4.2	4.2
ISF_05	78.1066	14.3496	ISF/05W_20190913	2019-09-13				4.7		0.15	32.0	1.80																4.2	4.2
ISF_06	78.1046	14.3783	ISF/06W_20190913	2019-09-13				5.0		0.15		1.90																3.9	3.9
ISF_07	78.1033	14.3817	ISF/07W_20190913	2019-09-13				5.0		0.15	33.0	2.00																3.9	3.9
ISF_23	78.1028	14.3942	ISF/23W_20190913	2019-09-13				5.0		0.15	32.5	1.90