Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Stumpp, Meike; Petersen, Inga; Thoben, Femke; Yan, Jia-Jiun; Hu, Marian Y (2020): Seawater carbonate chemistry and larval morphology, pigment cell response, larval density and Gastric pH of sea urchin [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.926044

Always quote citation above when using data! You can download the citation in several formats below.

RIS CitationBibTeX Citation

Abstract:
Larval stages of members of the Abulacraria superphylum including echinoderms and hemichordates have highly alkaline midguts. To date, the reason for the evolution of such extreme pH conditions in the gut of these organisms remains unknown. Here, we test the hypothesis that, analogous to the acidic stomachs of vertebrates, these alkaline conditions may represent a first defensive barrier to protect from environmental pathogens. pH-optimum curves for five different species of marine bacteria demonstrated a rapid decrease in proliferation rates by 50–60% between pH 8.5 and 9.5. Using the marine bacterium Vibrio diazotrophicus, which elicits a coordinated immune response in the larvae of the sea urchin Strongylocentrotus purpuratus, we studied the physiological responses of the midgut pH regulatory machinery to this pathogen. Gastroscopic microelectrode measurements demonstrate a stimulation of midgut alkalization upon infection with V. diazotrophicus accompanied by an upregulation of acid–base transporter transcripts of the midgut. Pharmacological inhibition of midgut alkalization resulted in an increased mortality rate of larvae during Vibrio infection. Reductions in seawater pH resembling ocean acidification conditions lead to moderate reductions in midgut alkalization. However, these reductions in midgut pH do not affect the immune response or resilience of sea urchin larvae to a Vibrio infection under ocean acidification conditions. Our study addressed the evolutionary benefits of the alkaline midgut of Ambulacraria larval stages. The data indicate that alkaline conditions in the gut may serve as a first defensive barrier against environmental pathogens and that this mechanism can compensate for changes in seawater pH.
Keyword(s):
Animalia; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Echinodermata; Growth/Morphology; Immunology/Self-protection; Laboratory experiment; North Pacific; Other; Pelagos; Reproduction; Single species; Strongylocentrotus purpuratus; Temperate; Zooplankton
Related to:
Stumpp, Meike; Petersen, Inga; Thoben, Femke; Yan, Jia-Jiun; Hu, Marian Y (2020): Alkaline guts contribute to immunity during exposure to acidified seawater in the sea urchin larva. Journal of Experimental Biology, 223, jeb222844, https://doi.org/10.1242/jeb.222844
Original version:
Stumpp, Meike; Petersen, Inga; Thoben, Femke; Yan, Jia-Jiun; Leippe, Matthias; Hu, Marian Y (2020): Mortality, pigment cell response and ion regulatory capacity in sea urchin larvae in response to Vibrio infection under pharmacological and ocean acidification treatments. PANGAEA, https://doi.org/10.1594/PANGAEA.914693
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2020): seacarb: seawater carbonate chemistry with R. R package version 3.2.14. https://CRAN.R-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2020) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-12-25.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeStumpp, Meikestudy
SpeciesSpeciesStumpp, Meike
Registration number of speciesReg spec noStumpp, Meike
Uniform resource locator/link to referenceURL refStumpp, MeikeWoRMS Aphia ID
FigureFigStumpp, Meike
TreatmentTreatStumpp, Meike
pHpHStumpp, MeikePotentiometricNBS scale
pH, standard errorpH std e±Stumpp, MeikePotentiometricNBS scale
RatioRatioStumpp, Meikestomach/body length ratio
10 Cells, totalCells tot#/lStumpp, Meike
11 Larval densityLarval dens#/mlStumpp, Meike
12 Time in hoursTimehStumpp, Meike
13 pHpHStumpp, MeikeAverage midgut pH
14 pH, standard errorpH std e±Stumpp, MeikeAverage midgut pH
15 pH changeD pHStumpp, Meikedelta midgut pH
16 pH change, standard errorpH change std e±Stumpp, Meikedelta midgut pH
17 Temperature, waterTemp°CStumpp, Meike
18 Temperature, water, standard errorT std e±Stumpp, Meike
19 SalinitySalStumpp, Meike
20 Alkalinity, totalATµmol/kgStumpp, MeikePotentiometric titration
21 Alkalinity, total, standard errorAT std e±Stumpp, MeikePotentiometric titration
22 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmStumpp, MeikeCalculated using CO2SYS
23 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Stumpp, MeikeCalculated using CO2SYS
24 Carbon, inorganic, dissolvedDICµmol/kgStumpp, MeikeCalculated using CO2SYS
25 Carbon, inorganic, dissolved, standard errorDIC std e±Stumpp, MeikeCalculated using CO2SYS
26 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
28 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1523 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Fig

Treat

pH
(NBS scale, Potentiometric)

pH std e [±]
(NBS scale, Potentiometric)

Ratio
(stomach/body length ratio)
10 
Cells tot [#/l]
11 
Larval dens [#/ml]
12 
Time [h]
13 
pH
(Average midgut pH)
14 
pH std e [±]
(Average midgut pH)
15 
D pH
(delta midgut pH)
16 
pH change std e [±]
(delta midgut pH)
17 
Temp [°C]
18 
T std e [±]
19 
Sal
20 
AT [µmol/kg]
(Potentiometric titration)
21 
AT std e [±]
(Potentiometric titration)
22 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
23 
pCO2water_SST_wet std e [±]
(Calculated using CO2SYS)
24 
DIC [µmol/kg]
(Calculated using CO2SYS)
25 
DIC std e [±]
(Calculated using CO2SYS)
26 
CSC flag
(Calculated using seacarb afte...)
27 
pH
(total scale, Calculated using...)
28 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
29 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
30 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
31 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
32 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
33 
DIC [µmol/kg]
(Calculated using seacarb afte...)
34 
Omega Arg
(Calculated using seacarb afte...)
35 
Omega Cal
(Calculated using seacarb afte...)
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected8.080.0823.7100.009817.30.4032230529375812062137267.9618.49519.67521.501974.53135.192128.202.113.29
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.920.0222.4100.839717.30.4032232725581332124129267.8028.22793.45796.252085.8798.812212.901.542.41
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.710.0224.5300.009517.30.4032224129939342188124267.5945.901290.241294.792090.9461.062197.900.951.49
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.510.0225.6000.008917.30.40322257251546742247132267.3975.192113.662121.122159.4639.762274.400.620.97
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.310.0229.4300.258817.30.403222902625391032313127267.19122.873454.293466.502226.7625.872375.500.400.63
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.220.0327.7500.088217.30.403222392730872252350142267.10148.614177.934192.712188.3320.652357.600.320.50
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected8.080.0822.1600.259017.30.4032230529375812062137267.9618.49519.67521.501974.53135.192128.202.113.29
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.920.0222.2900.389017.30.4032232725581332124129267.8028.22793.45796.252085.8798.812212.901.542.41
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.710.0223.2801.888117.30.4032224129939342188124267.5945.901290.241294.792090.9461.062197.900.951.49
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.510.0223.5900.339517.30.40322257251546742247132267.3975.192113.662121.122159.4639.762274.400.620.97
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.310.0224.9800.388517.30.403222902625391032313127267.19122.873454.293466.502226.7625.872375.500.400.63
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.220.0327.3100.677517.30.403222392730872252350142267.10148.614177.934192.712188.3320.652357.600.320.50
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected8.080.0821.1904.2510017.30.4032230529375812062137267.9618.49519.67521.501974.53135.192128.202.113.29
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.920.0221.9709017.30.4032232725581332124129267.8028.22793.45796.252085.8798.812212.901.542.41
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.710.0221.9708917.30.4032224129939342188124267.5945.901290.241294.792090.9461.062197.900.951.49
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.510.0222.8101.569417.30.40322257251546742247132267.3975.192113.662121.122159.4639.762274.400.620.97
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.310.0223.8604.506317.30.403222902625391032313127267.19122.873454.293466.502226.7625.872375.500.400.63
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5uninfected7.220.0326.2101.254217.30.403222392730872252350142267.10148.614177.934192.712188.3320.652357.600.320.50
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected8.080.0819.95013.8210017.30.4032230529375812062137267.9618.49519.67521.501974.53135.192128.202.113.29
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.920.0220.62017.588517.30.4032232725581332124129267.8028.22793.45796.252085.8798.812212.901.542.41
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.710.0222.46015.587217.30.4032224129939342188124267.5945.901290.241294.792090.9461.062197.900.951.49
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.510.0222.6909.837817.30.40322257251546742247132267.3975.192113.662121.122159.4639.762274.400.620.97
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.310.0227.3009.928217.30.403222902625391032313127267.19122.873454.293466.502226.7625.872375.500.400.63
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.220.0325.1205.137617.30.403222392730872252350142267.10148.614177.934192.712188.3320.652357.600.320.50
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected8.080.0820.04012.6710017.30.4032230529375812062137267.9618.49519.67521.501974.53135.192128.202.113.29
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.920.0221.71010.388217.30.4032232725581332124129267.8028.22793.45796.252085.8798.812212.901.542.41
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.710.0221.6507.298317.30.4032224129939342188124267.5945.901290.241294.792090.9461.062197.900.951.49
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.510.0221.83015.048517.30.40322257251546742247132267.3975.192113.662121.122159.4639.762274.400.620.97
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.310.0223.4308.137617.30.403222902625391032313127267.19122.873454.293466.502226.7625.872375.500.400.63
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.220.0326.7008.967917.30.403222392730872252350142267.10148.614177.934192.712188.3320.652357.600.320.50
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected8.080.0818.79013.889517.30.4032230529375812062137267.9618.49519.67521.501974.53135.192128.202.113.29
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.920.0219.4109817.30.4032232725581332124129267.8028.22793.45796.252085.8798.812212.901.542.41
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.710.0218.7608617.30.4032224129939342188124267.5945.901290.241294.792090.9461.062197.900.951.49
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.510.0220.91013.948417.30.40322257251546742247132267.3975.192113.662121.122159.4639.762274.400.620.97
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.310.0223.48012.816417.30.403222902625391032313127267.19122.873454.293466.502226.7625.872375.500.400.63
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org5infected7.220.0325.42010.505517.30.403222392730872252350142267.10148.614177.934192.712188.3320.652357.600.320.50
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org68.100.031.0008.930.1117.20.033221562351012196747267.9517.75497.54499.301850.31123.441991.501.933.01
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.700.031.0008.610.0317.20.02322231781248130218567267.5649.291381.751386.632091.3256.782197.400.891.38
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.400.021.0008.380.1417.20.02322144832813182220390267.3088.742487.522496.312067.6330.832187.200.480.75
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org68.100.031.0001-0.0890.13017.20.033221562351012196747267.9517.75497.54499.301850.31123.441991.501.933.01
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org68.100.031.0002-0.0640.09417.20.033221562351012196747267.9517.75497.54499.301850.31123.441991.501.933.01
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org68.100.031.00040.0190.03717.20.033221562351012196747267.9517.75497.54499.301850.31123.441991.501.933.01
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org68.100.031.00060.2030.02417.20.033221562351012196747267.9517.75497.54499.301850.31123.441991.501.933.01
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.700.031.00010.0050.11617.20.02322231781248130218567267.5649.291381.751386.632091.3256.782197.400.891.38
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.700.031.00020.0980.07017.20.02322231781248130218567267.5649.291381.751386.632091.3256.782197.400.891.38
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.700.031.00040.1610.08517.20.02322231781248130218567267.5649.291381.751386.632091.3256.782197.400.891.38
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.700.031.00060.1680.04217.20.02322231781248130218567267.5649.291381.751386.632091.3256.782197.400.891.38
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.400.021.0001-0.0580.15817.20.02322144832813182220390267.3088.742487.522496.312067.6330.832187.200.480.75
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.400.021.00020.2440.11617.20.02322144832813182220390267.3088.742487.522496.312067.6330.832187.200.480.75
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.400.021.00040.4020.12917.20.02322144832813182220390267.3088.742487.522496.312067.6330.832187.200.480.75
laboratoryStrongylocentrotus purpuratus (echinoderms)240747marinespecies.org67.400.021.00060.3870.12917.20.02322144832813182220390267.3088.742487.522496.312067.6330.832187.200.480.75