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Data Publisher for Earth & Environmental Science

Wang, Z; Tsementzi, Despina; Williams, Tiffany C; Juarez, Doris L; Blinebry, Sara K; Garcia, Nathan S; Sienkiewicz, Brooke K; Konstantinidis, Konstantinos T; Johnson, Zackary I; Hunt, Dana E (2021): Seawater carbonate chemistry and respiration, primary production and composition of microbial community [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.923999

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Abstract:
Ambient conditions shape microbiome responses to both short- and long-duration environment changes through processes including physiological acclimation, compositional shifts, and evolution. Thus, we predict that microbial communities inhabiting locations with larger diel, episodic, and annual variability in temperature and pH should be less sensitive to shifts in these climate-change factors. To test this hypothesis, we compared responses of surface ocean microbes from more variable (nearshore) and more constant (offshore) sites to short-term factorial warming (+3 °C) and/or acidification (pH -0.3). In all cases, warming alone significantly altered microbial community composition, while acidification had a minor influence. Compared with nearshore microbes, warmed offshore microbiomes exhibited larger changes in community composition, phylotype abundances, respiration rates, and metatranscriptomes, suggesting increased sensitivity of microbes from the less-variable environment. Moreover, while warming increased respiration rates, offshore metatranscriptomes yielded evidence of thermal stress responses in protein synthesis, heat shock proteins, and regulation. Future oceans with warmer waters may enhance overall metabolic and biogeochemical rates, but they will host altered microbial communities, especially in relatively thermally stable regions of the oceans.
Keyword(s):
Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Community composition and diversity; Entire community; Laboratory experiment; North Atlantic; Pelagos; Primary production/Photosynthesis; Respiration; Temperate; Temperature
Supplement to:
Wang, Z; Tsementzi, Despina; Williams, Tiffany C; Juarez, Doris L; Blinebry, Sara K; Garcia, Nathan S; Sienkiewicz, Brooke K; Konstantinidis, Konstantinos T; Johnson, Zackary I; Hunt, Dana E (2020): Environmental stability impacts the differential sensitivity of marine microbiomes to increases in temperature and acidity. The ISME Journal, https://doi.org/10.1038/s41396-020-00748-2
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Median Latitude: 34.376500 * Median Longitude: -76.434100 * South-bound Latitude: 34.034900 * West-bound Longitude: -76.670700 * North-bound Latitude: 34.718100 * East-bound Longitude: -76.197500
Event(s):
Newport_River_estuary_nearshore * Latitude: 34.718100 * Longitude: -76.670700 * Method/Device: Experiment (EXP)
Newport_River_estuary_offshore * Latitude: 34.034900 * Longitude: -76.197500 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-10-20.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Event labelEventHunt, Dana E
2TypeTypeHunt, Dana Estudy
3Day of experimentDOEdayHunt, Dana E
4IdentificationIDHunt, Dana E
5TreatmentTreatHunt, Dana E
6ReplicateReplHunt, Dana E
7CommentCommentHunt, Dana E
8Chlorophyll aChl aµg/lHunt, Dana E
9Respiration rate, oxygenResp O2mg/l/dayHunt, Dana E
10Primary production of carbon per hourPP Cmg/m3/hHunt, Dana E
11Cell densityCells#/mlHunt, Dana ESynechococcus
12Cell densityCells#/mlHunt, Dana EPeuk
13Cell densityCells#/mlHunt, Dana Epico-Cyanobacteria
14Cell densityCells#/mlHunt, Dana EBac
15SalinitySalHunt, Dana E
16Temperature, waterTemp°CHunt, Dana Ein lab
17Temperature, waterTemp°CHunt, Dana Ein situ
18Carbon, inorganic, dissolvedDICµmol/kgHunt, Dana E
19pHpHHunt, Dana Etotal scale, at 25 C
20Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
21pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
22Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
24Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
26Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
12208 data points

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