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Wang, Xiaojie; Lv, Yutao; Xie, Jinling; Li, Baolin; Zhou, Tangjian; Chen, Yaqi; Chen, Yi; Song, Jiakun (2020): Seawater carbonate chemistry and expression of c-Fos protein in the brain of marine medaka [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.920009

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Abstract:
Altered behaviors have been reported in many marine fish following exposure to high CO2 concentrations. However, the mechanistic link between elevated CO2 and activation of brain regions in fish is unknown. Herein, we examined the relative quantification and location of c-Fos expression in marine medaka following acute (360 min) and short-term (7 d) exposure to CO2-enriched water (1000 ppm and 1800 ppm CO2). In the control and two treatment groups, pH was stable at 8.21, 7.92 and 7.64, respectively. After acute exposure to seawater acidified by enrichment with CO2, there was a clear upregulation of c-Fos protein in the medaka brain (P < 0.05). c-Fos protein expression peaked after 120 min exposure in the two treatment groups and thereafter began to decline. There were marked increases in c-Fos-labeling in the ventricular and periventricular zones of the cerebral hemispheres and the medulla oblongata. After 1800 ppm CO2 exposure for 7 d, medaka showed significant preference for dark zones during the initial 2 min period. c-Fos protein expression in the ventricular and periventricular zones of the diencephalon in medaka exposed to 1000 ppm and 1800 ppm CO2 were 0.51 ± 0.10 and 1.34 ± 0.30, respectively, which were significantly higher than controls (P < 0.05). Highest doublecortin protein expression occurred in theventricular zones of the diencephalon and mesencephalon. These findings suggest that the ventricular and periventricular zones of the cerebral hemispheres and the medulla oblongata of marine medaka are involved in rapid acid-base regulation. Prolonged ocean acidification may induce cell mitosis and differentiation in the adult medaka brain.
Keyword(s):
Animalia; Behaviour; Bottles or small containers/Aquaria (<20 L); Chordata; Coast and continental shelf; Gene expression (incl. proteomics); Laboratory experiment; Nekton; North Pacific; Oryzias melastigma; Pelagos; Single species; Temperate
Supplement to:
Wang, Xiaojie; Lv, Yutao; Xie, Jinling; Li, Baolin; Zhou, Tangjian; Chen, Yaqi; Chen, Yi; Song, Jiakun (2020): Brain regions of marine medaka activated by acute and short-term ocean acidification. Science of the Total Environment, 720, 137279, https://doi.org/10.1016/j.scitotenv.2020.137279
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-07-07.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeWang, Xiaojiestudy
2SpeciesSpeciesWang, Xiaojie
3Registration number of speciesReg spec noWang, Xiaojie
4Uniform resource locator/link to referenceURL refWang, XiaojieWoRMS Aphia ID
5TreatmentTreatWang, Xiaojie
6Experiment durationExp durationhWang, Xiaojie
7Experiment durationExp durationdaysWang, Xiaojie
8Time in minutesTimeminWang, Xiaojie
9pH, NBS scalepH NBSWang, XiaojieNBS scale
10pH, standard deviationpH std dev±Wang, XiaojieNBS scale
11Gene expressionGene expressionWang, Xiaojiec-Fos protein
12Gene expression, standard deviationGene expression std dev±Wang, Xiaojiec-Fos protein
13Time point, descriptiveTime pointWang, Xiaojie
14Proportion of timeProportion of timeWang, Xiaojiein black zone
15Proportion, standard deviationProp std dev±Wang, Xiaojiein black zone
16Speed, swimmingSp swimcm/sWang, Xiaojie
17Speed, swimming, standard deviationSp swim std dev±Wang, Xiaojie
18Gene expressionGene expressionWang, Xiaojiec-Fos protein after exposure to acidified water for 7 d
19Gene expressionGene expressionWang, XiaojieDCX protein after exposure to acidified water for 7 d
20SalinitySalWang, Xiaojie
21Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmWang, XiaojieCalculated using CO2SYS
22Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Wang, XiaojieCalculated using CO2SYS
23Temperature, waterTemp°CWang, Xiaojie
24Temperature, water, standard deviationTemp std dev±Wang, Xiaojie
25Alkalinity, totalATµmol/kgWang, XiaojiePotentiometric titration
26Alkalinity, total, standard deviationAT std dev±Wang, XiaojiePotentiometric titration
27pH, NBS scalepH NBSWang, XiaojiePotentiometricNBS scale
28pH, standard deviationpH std dev±Wang, XiaojiePotentiometricNBS scale
29Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1337 data points

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