Citation:

PANGAEA.917599

Name: Metadata and NCBI-Accession numbers of Vazella pourtalesii metagenomes from the Scotian Shelf (Canada) in summer 2017
Published: 2020-05-19
License: https://creativecommons.org/licenses/by/4.0/
Keywords: glass sponge; Hexactinellida; metagenomic binning; microbial metabolism; microbiome; Porifera; symbiosis

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Abstract:

Until now few studies have explored the microbiomes of glass sponges (Hexactinellida). Vazella pourtalesii forms globally unique, monospecific sponge grounds under low-oxygen conditions on the Scotian Shelf. Using metagenomic binning we performed detailed analyses of the metabolic functional capacities of four V. pourtalesii-associated microbial taxa (SAR324, Patescibacteria, Nanoarchaeota, and Crenarchaeota).

Keyword(s):

glass sponge; Hexactinellida; metagenomic binning; microbial metabolism; microbiome; Porifera; symbiosis

Supplement to:

Bayer, Kristina; Busch, Kathrin; Kenchington, Ellen L; Beazley, Lindsay; Franzenburg, Sören; Michels, Jan; Hentschel, Ute; Slaby, Beate M (2020): Microbial Strategies for Survival in the Glass Sponge Vazella pourtalesii. mSystems, 5(4), https://doi.org/10.1128/mSystems.00473-20

Related to:

Busch, Kathrin; Beazley, Lindsay; Kenchington, Ellen L; Whoriskey, Frederick; Slaby, Beate M; Hentschel, Ute (2020): Metadata and NCBI-Accession numbers of 16S data for seawater, sediment, biofilm, and Vazella pourtalesii sponges from the Scotian Shelf (Canada) in summer 2016 and 2017. PANGAEA, https://doi.org/10.1594/PANGAEA.913907

Project(s):

Deep-sea Sponge Grounds Ecosystems of the North Atlantic (SponGES)

Funding:

Horizon 2020 (H2020), grant/award no. 679849 : Deep-sea Sponge Grounds Ecosystems of the North Atlantic

Coverage:

Median Latitude: 43.936575 * Median Longitude: -63.124117 * South-bound Latitude: 43.894200 * West-bound Longitude: -63.204200 * North-bound Latitude: 43.998300 * East-bound Longitude: -63.076000

Date/Time Start: 2017-09-03T10:02:46 * Date/Time End: 2017-09-05T22:26:53

Minimum DEPTH, water: 161 m * Maximum DEPTH, water: 183 m

Event(s):

MLB2017001_006 (ROPOS 2030) * Latitude Start: 43.894200 * Longitude Start: -63.075500 * Latitude End: 43.894200 * Longitude End: -63.076600 * Date/Time Start: 2017-09-03T15:22:00 * Date/Time End: 2017-09-03T17:27:00 * Elevation Start: -161.1 m * Elevation End: -160.6 m * Location: South Atlantic Ocean * Campaign: * Basis: * Method/Device: Remote operated platform for oceanography (ROPOS) * Comment: ROPOS 2030

MLB2017001_015 (OTNMoor_275) * Latitude: 43.998300 * Longitude: -63.183000 * Date/Time: 2017-09-05T20:42:00 * Elevation: -176.1 m * Location: South Atlantic Ocean * Campaign: * Basis: * Method/Device: Mooring (MOOR) * Comment: OTN Recovery

MLB2017001_017 (OTNMoor_275) * Latitude: 43.992300 * Longitude: -63.204200 * Date/Time: 2017-09-05T22:26:00 * Elevation: -183.1 m * Location: South Atlantic Ocean * Campaign: * Basis: * Method/Device: (CTD-RO) * Comment: CTD & Niskin near Mooring

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Comment
1	Event label	Event		Busch, Kathrin
2	Station label	Station		Busch, Kathrin
3	DATE/TIME	Date/Time		Busch, Kathrin	Geocode
4	LATITUDE	Latitude		Busch, Kathrin	Geocode
5	LONGITUDE	Longitude		Busch, Kathrin	Geocode
6	Device type	Device		Busch, Kathrin
7	Sample code/label	Sample label		Busch, Kathrin
8	Sample type	Samp type		Busch, Kathrin
9	Sample comment	Sample comment		Busch, Kathrin	group
10	Identification	ID		Busch, Kathrin
11	Accession number, genetics	Access no gen		Busch, Kathrin	NCBI Accession number 16S
12	Accession number, genetics	Access no gen		Busch, Kathrin	NCBI Accession number metagenome
13	Analytical method	Method		Busch, Kathrin	Light Microscopy (semi-thin sections)
14	Analytical method	Method		Busch, Kathrin	TEM (ultra-thin sections)
15	Analytical method	Method		Busch, Kathrin	SEM
16	Area/locality	Area		Busch, Kathrin
17	DEPTH, water	Depth water	m	Busch, Kathrin	Geocode
18	Campaign	Campaign		Busch, Kathrin
19	Well-known text	WKT		Busch, Kathrin

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

168 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 Station	3 Date/Time	4 Latitude	5 Longitude	6 Device	7 Sample label	8 Samp type	9 Sample comment (group)	10 ID	11 Access no gen (NCBI Accession number 16S)	12 Access no gen (NCBI Accession number metagenome)	13 Method (Light Microscopy (semi-thin s...)	14 Method (TEM (ultra-thin sections))	15 Method (SEM)	16 Area	17 Depth water [m]	18 Campaign	19 WKT
MLB2017001_006	MLB2017001_CON6	2017-09-03T10:02	43.8942	-63.0760	Bottle, Niskin (ROV)	Seawater (Sambro Bank SCA): SW-00078	Seawater	SambroBankSCA	SW-00078	insdc:SRR11365530	insdc:SRR11455654	NA	NA	NA	Sambro Bank (MRGID: 34408)	161	Canada2017	LINESTRING(-63.0755 43.89415, -63.076568 43.894246)
MLB2017001_006	MLB2017001_CON6	2017-09-03T10:02	43.8942	-63.0760	Bottle, Niskin (ROV)	Seawater (Sambro Bank SCA): SW-00079	Seawater	SambroBankSCA	SW-00079	insdc:SRR11365529	insdc:SRR11455653	NA	NA	NA	Sambro Bank (MRGID: 34408)	161	Canada2017	LINESTRING(-63.0755 43.89415, -63.076568 43.894246)
MLB2017001_006	MLB2017001_CON6	2017-09-03T10:02	43.8942	-63.0760	Bottle, Niskin (ROV)	Seawater (Sambro Bank SCA): SW-00081	Seawater	SambroBankSCA	SW-00081	insdc:SRR11365528	insdc:SRR11455652	NA	NA	NA	Sambro Bank (MRGID: 34408)	161	Canada2017	LINESTRING(-63.0755 43.89415, -63.076568 43.894246)
MLB2017001_017	MLB2017001_CON17	2017-09-05T22:26	43.9923	-63.2042	CTD/Rosette (CTD-RO)	Seawater (OTN Mooring): SW-00082	Seawater	OTNMooring	SW-00082	insdc:SRR11365527	insdc:SRR11455658	NA	NA	NA	Sambro Bank (MRGID: 34408)	183	Canada2017	POINT(-63.204218 43.992311)
MLB2017001_017	MLB2017001_CON17	2017-09-05T22:26	43.9923	-63.2042	CTD/Rosette (CTD-RO)	Seawater (OTN Mooring): SW-00083	Seawater	OTNMooring	SW-00083	insdc:SRR11365526	insdc:SRR11455657	NA	NA	NA	Sambro Bank (MRGID: 34408)	183	Canada2017	POINT(-63.204218 43.992311)
MLB2017001_006	MLB2017001_CON6	2017-09-03T10:02	43.8942	-63.0760	Remotely operated vehicle (ROV)	Vazella pourtalesii (Sambro Bank SCA): WB-00351	Vazella_pourtalesii	SambroBankSCA	WB-00351	insdc:SRR11365513	insdc:SRR11455660	yes	yes	yes	Sambro Bank (MRGID: 34408)	161	Canada2017	LINESTRING(-63.0755 43.8942 -63.0766 43.8942)
MLB2017001_006	MLB2017001_CON6	2017-09-03T10:02	43.8942	-63.0760	Remotely operated vehicle (ROV)	Vazella pourtalesii (Sambro Bank SCA): WB-00354	Vazella_pourtalesii	SambroBankSCA	WB-00354	insdc:SRR11365512	insdc:SRR11455659	yes	yes	yes	Sambro Bank (MRGID: 34408)	161	Canada2017	LINESTRING(-63.0755 43.8942 -63.0766 43.8942)
MLB2017001_006	MLB2017001_CON6	2017-09-03T10:02	43.8942	-63.0760	Remotely operated vehicle (ROV)	Vazella pourtalesii (Sambro Bank SCA): WB-00359	Vazella_pourtalesii	SambroBankSCA	WB-00359	insdc:SRR11365511	insdc:SRR11455656	yes	yes	yes	Sambro Bank (MRGID: 34408)	161	Canada2017	LINESTRING(-63.0755 43.8942 -63.0766 43.8942)
MLB2017001_006	MLB2017001_CON6	2017-09-03T10:02	43.8942	-63.0760	Remotely operated vehicle (ROV)	Vazella pourtalesii (Sambro Bank SCA): WB-00362	Vazella_pourtalesii	SambroBankSCA	WB-00362	insdc:SRR11365509	insdc:SRR11455655	no	no	no	Sambro Bank (MRGID: 34408)	161	Canada2017	LINESTRING(-63.0755 43.8942 -63.0766 43.8942)
MLB2017001_015	MLB2017001_CON15	2017-09-05T20:42	43.9983	-63.1830	Mooring (long time), acoustic (MOORY)	Vazella pourtalesii (OTN Mooring): WB-00367	Vazella_pourtalesii	OTNMooring	WB-00367	insdc:SRR11365507	insdc:SRR11455651	no	no	no	Sambro Bank (MRGID: 34408)	176	Canada2017	POINT(-63.1830 43.9983)
MLB2017001_015	MLB2017001_CON15	2017-09-05T20:42	43.9983	-63.1830	Mooring (long time), acoustic (MOORY)	Vazella pourtalesii (OTN Mooring): WB-00368	Vazella_pourtalesii	OTNMooring	WB-00368	insdc:SRR11365506	insdc:SRR11455650	no	no	no	Sambro Bank (MRGID: 34408)	176	Canada2017	POINT(-63.1830 43.9983)
MLB2017001_015	MLB2017001_CON15	2017-09-05T20:42	43.9983	-63.1830	Mooring (long time), acoustic (MOORY)	Vazella pourtalesii (OTN Mooring): WB-00373	Vazella_pourtalesii	OTNMooring	WB-00373	insdc:SRR11365555	insdc:SRR11455649	no	no	no	Sambro Bank (MRGID: 34408)	176	Canada2017	POINT(-63.1830 43.9983)