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Fuentes-Lema, Antonio; Sanleón-Bartolomé, Henar; Lubian, L M; Sobrino, Cristina (2018): Seawater carbonate chemistry and metabolism of bacterial communities from coastal waters [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.912775

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Abstract:
Microcosm experiments to assess the bacterioplankton's response to phytoplankton-derived organic matter obtained under current and future ocean CO2 levels were performed. Surface seawater enriched with inorganic nutrients was bubbled for 8 days with air (current CO2 scenario) or with a 1000ppm CO2 air mixture (future CO2 scenario) under solar radiation. The organic matter produced under the current and future CO2 scenarios was subsequently used as an inoculum. Triplicate 12L flasks filled with 1.2µm of filtered natural seawater enriched with the organic matter inocula were incubated in the dark for 8 days under CO2 conditions simulating current and future CO2 scenarios, to study the bacterial response. The acidification of the media increased bacterial respiration at the beginning of the experiment, while the addition of the organic matter produced under future levels of CO2 was related to changes in bacterial production and abundance. This resulted in a 67% increase in the integrated bacterial respiration under future CO2 conditions compared to present CO2 conditions and 41% higher integrated bacterial abundance with the addition of the acidified organic matter compared to samples with the addition of non acidified organic matter. This study demonstrates that the increase in atmospheric CO2 levels can impact bacterioplankton metabolism directly, by changes in the respiration rate, and indirectly, by changes on the organic matter, which affected bacterial production and abundance.
Keyword(s):
Biomass/Abundance/Elemental composition; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Entire community; Laboratory experiment; North Atlantic; Other; Other metabolic rates; Pelagos; Respiration; Temperate
Supplement to:
Fuentes-Lema, Antonio; Sanleón-Bartolomé, Henar; Lubian, L M; Sobrino, Cristina (2018): Effects of elevated CO2 and phytoplankton-derived organic matter on the metabolism of bacterial communities from coastal waters. Biogeosciences, 15(22), 6927-6940, https://doi.org/10.5194/bg-15-6927-2018
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Coverage:
Latitude: 42.230000 * Longitude: -8.780000
Date/Time Start: 2013-06-27T00:00:00 * Date/Time End: 2013-06-27T00:00:00
Event(s):
Ria_de_Vigo * Latitude: 42.230000 * Longitude: -8.780000 * Date/Time: 2013-06-27T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-02-28.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeSobrino, CristinaStudy
2TreatmentTreatSobrino, Cristina
3Experiment durationExp durationdaysSobrino, Cristina
4Chlorophyll aChl aµg/lSobrino, Cristina
5Chlorophyll a, standard deviationChl a std dev±Sobrino, Cristina
6Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSobrino, Cristina
7Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Sobrino, Cristina
8Carbon, organic, dissolvedDOCµmol/lSobrino, Cristina
9Carbon, organic, dissolved, standard deviationDOC std dev±Sobrino, Cristina
10pHpHSobrino, Cristinatotal scale
11pH, standard deviationpH std dev±Sobrino, Cristinatotal scale
12Respiration rate, oxygenResp O2µmol/l/daySobrino, Cristina
13Respiration rate, oxygen, standard deviationResp O2 std dev±Sobrino, Cristina
14Respiration rate, oxygen, cumulativeResp O2 cumµmol/lSobrino, Cristina
15Respiration rate, oxygen, cumulative, standard deviationResp O2 cum std dev±Sobrino, Cristina
16BacteriaBact#/mlSobrino, Cristinaactive
17Bacteria, standard deviationBact std dev±Sobrino, Cristinaactive
18BacteriaBact#/mlSobrino, Cristina
19Bacteria, standard deviationBact std dev±Sobrino, Cristina
20BacteriaBact#/mlSobrino, Cristinacumulative
21Bacteria, standard deviationBact std dev±Sobrino, Cristinacumulative
22Bacterial productionBPµg/l/daySobrino, Cristina
23Bacterial production, standard deviationBP std dev±Sobrino, Cristina
24Bacterial productionBPµg/lSobrino, Cristinacumulative
25Bacterial production, standard deviationBP std dev±Sobrino, Cristinacumulative
26Bacteria, carbon demandBCDµmol/l/daySobrino, Cristina
27Bacteria, carbon demand, standard deviationBCD std dev±Sobrino, Cristina
28Bacteria, carbon demand, cumulativeBCD cumµmol/lSobrino, Cristinacumulative
29Bacteria, carbon demand, cumulative, standard deviationBCD cum std dev±Sobrino, Cristinacumulative
30Bacteria, growth efficiencyBact growth effSobrino, Cristina
31Bacteria, growth efficiency, standard deviationBact growth eff std dev±Sobrino, Cristina
32Bacteria, growth efficiencyBact growth effSobrino, Cristinacumulative
33Bacteria, growth efficiency, standard deviationBact growth eff std dev±Sobrino, Cristinacumulative
34pHpHSobrino, Cristinatotal scale
35pH, standard deviationpH std dev±Sobrino, Cristinatotal scale
36Temperature, waterTemp°CSobrino, Cristina
37Temperature, water, standard deviationTemp std dev±Sobrino, Cristina
38SalinitySalSobrino, Cristina
39Salinity, standard deviationSal std dev±Sobrino, Cristina
40Carbon dioxideCO2µmol/kgSobrino, Cristina
41Carbon dioxide, standard deviationCO2 std dev±Sobrino, Cristina
42Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSobrino, Cristina
43Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Sobrino, Cristina
44Bicarbonate ion[HCO3]-µmol/kgSobrino, Cristina
45Bicarbonate ion, standard deviation[HCO3]- std dev±Sobrino, Cristina
46Carbonate ion[CO3]2-µmol/kgSobrino, Cristina
47Carbonate ion, standard deviation[CO3]2- std dev±Sobrino, Cristina
48Carbon, inorganic, dissolvedDICµmol/kgSobrino, Cristina
49Carbon, inorganic, dissolved, standard deviationDIC std dev±Sobrino, Cristina
50Alkalinity, totalATµmol/kgSobrino, Cristina
51Alkalinity, total, standard deviationAT std dev±Sobrino, Cristina
52Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
55Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
57Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
59Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
61Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
62Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
63Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
64Alkalinity, total, standard deviationAT std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
65Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
66Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
67Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
68Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
2520 data points

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