Zhang, Wei; Tang, Xuexi; Yang, Yingying; Zhang, Qian Liua Xin; Zhang, Xinxin: Transcriptome analysis of response characteristic to tributyl phosphate stress in Phaeodactylum tricornutum [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.910011 (dataset in review)
Abstract:
Supplementary Table S1. Transcriptomic sequencing data summary. CG: The TBP concentration in the control groups, GC1-3: blank control without TBP and DMSO, CG4-6: solvent control with only DMSO) was 0 mg L-1; T1:Treatment group 1 was exposed to a TBP concentration of 0.4 mg L-1;T2: treatment group 2 was exposed to a TBP concentration of 0.8 mg L-1; T3: treatment group 3 was exposed to a TBP concentration of 1.2 mg L-1.Clean_bases, the number of bases in clean reads after filtering; Q30, the percentage of bases with a Qphred value > 30 as a percentage of the total number of bases; Total mapped reads, the number of sequences mapped to the genome; Uniquely mapped reads, the number of sequences with unique alignment positions on the reference genome.
Supplementary Table S2: Reads per kilobase of exon per million reads mapped (FPKM) value of each gene. CG: The TBP concentration in the control groups, GC1-3: blank control without TBP and DMSO, CG4-6: solvent control with only DMSO) was 0 mg L-1; T1:Treatment group 1 was exposed to a TBP concentration of 0.4 mg L-1;T2: treatment group 2 was exposed to a TBP concentration of 0.8 mg L-1; T3: treatment group 3 was exposed to a TBP concentration of 1.2 mg L-1. Supplementary Table S4: Association analysis between Gene Significance (GS) for four phenotypes and Module Membership (MM) in module 6. GS.TBP_treat: GS for TBP_treat; p.GS.TBP_treat: P-value of GS for TBP_treat; GS.Concentration: GS for Concentration; p.GS.Concentration: P-value of GS for Concentration; GS.Apoptotic_rate: GS for Apoptotic_rate; p.GS.Apoptotic_rate: P-value of GS for Apoptotic_rate; GS.k: GS for Specific growth rate; p.GS.k: P-value of GS for Specific growth rate; MM-module6: Module Membership (MM) in module 6; p.MM-module6: P-value of Module Membership (MM) in module 6.
Supplementary Figure S1. Proteasome activity of peptidyl-glutamyl/peptide-hydrolyzing-like (PGPH-L), trypsin-like (T-L), and chymotrypsin-like (CT-L). Suc-LLVY-AMC (Succinyl-Leu- Leu-Val-Tyr-7-Amino-4-methylcoumarin), Z-LLE-AMC (Z-Leu-Leu-Glu-7-Amino-4-A GI coumarin) and Z-ARR-AMC (Z-Ala-Arg-Arg-7-amino-4-methylcoumarin) (Calbiochem, La Jolla, CA) were measured for Proteasome activity PGPH-L, TL and CT- L, respectively. A: Proteasome activity of peptidyl-glutamyl/peptide-hydrolyzing-like (PGPH-L); B: Proteasome activity of trypsin-like (T-L); C: Proteasome activity of chymotrypsin-like (CT-L). And different superscript letters indicate statistically significant differences between LC and HC conditions.
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | File name | File name | Zhang, Wei | |||
| 2 | File format | File format | Zhang, Wei | |||
| 3 | File size | File size | kByte | Zhang, Wei | ||
| 4 | Uniform resource locator/link to file | URL file | Zhang, Wei |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0) (License comes into effect after moratorium ends)
Size:
16 data points