Steffen, Karin; Indraningrat, Anak Agung Gede; Erngren, Ida; Haglöf, Jakob; Becking, Leontine E; Kenchington, Ellen L; Smidt, Hauke; Yashayaev, Igor M; Pettersson, Curt; Cárdenas, Paco; Sipkema, Detmer (2019): Collection data, 16S microbiome and metabolome of Geodia barretti, Stryphnus fortis and Weberella bursa, in the Davis Strait [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.909246
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Abstract:
Collection data of the marine sponge specimens studied; three species: Geodia barretti, Stryphnus fortis and Weberella bursa. Collection data includes locality, depth, salinity, bottom temperature, gear, date, cruise and station# and a collection number for every specimen (DFO Canada collections). NCBI SRA# of the 16S gene amplicon sequencing of their microbiome. Numbers of the UPLC-HRMS runs (four different modes for every specimen: HILIC+, HILIC-, RP+ and RP-). The raw UPLC-HRMS datasets are deposited in the repository metabolights (www.ebi.ac.uk/metabolights/MTBLS1388). QC runs are Quality Control runs for the UPLC-HRMS experiment (also deposited in metabolights).
Keyword(s):
Related to:
Steffen, Karin; Indraningrat, Anak Agung Gede; Erngren, Ida; Haglöf, Jakob; Becking, Leontine E; Smidt, Hauke; Yashayaev, Igor M; Kenchington, Ellen L; Pettersson, Curt; Cárdenas, Paco; Sipkema, Detmer (2022): Oceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges. Scientific Reports, 12, 3356, https://doi.org/10.1038/s41598-022-07292-3
Project(s):
Funding:
Horizon 2020 (H2020), grant/award no. 679849: Deep-sea Sponge Grounds Ecosystems of the North Atlantic
Coverage:
Median Latitude: 63.085783 * Median Longitude: -60.213565 * South-bound Latitude: 61.147942 * West-bound Longitude: -68.780770 * North-bound Latitude: 66.382450 * East-bound Longitude: -57.965730
Date/Time Start: 2011-09-24T00:00:00 * Date/Time End: 2015-09-23T00:00:00
Minimum DEPTH, water: 244 m * Maximum DEPTH, water: 1476 m
Event(s):
PAA2011007_Gb4 * Latitude: 61.908942 * Longitude: -63.637153 * Date/Time: 2011-10-09T00:00:00 * Elevation: -514.0 m * Campaign: PAA2011007 * Basis: Paamiut
PAA2011007_Gb6 * Latitude: 61.147942 * Longitude: -63.560678 * Date/Time: 2011-09-29T00:00:00 * Elevation: -563.0 m * Campaign: PAA2011007 * Basis: Paamiut
PAA2011007_Gb10 * Latitude: 62.628140 * Longitude: -60.925362 * Date/Time: 2011-10-11T00:00:00 * Elevation: -801.0 m * Campaign: PAA2011007 * Basis: Paamiut
Comment:
Sponge specimens were collected in the Davis Strait area between 2011 and 2015 by the crews of the R/V Pâmiut of the Greenland Institute of Natural Resources during cruises conducted by Fisheries and Oceans Canada. Sponges were dredged using Alfredo or Cosmos benthic trawls at depths between 244 m and 1481 m. Collectors on board were Dr. Wojciech Walkusz and Tim Siferd, Fisheries & Oceans Canada (DFO), Central and Arctic Division, Winnipeg, Manitoba, during their multispecies stock assessment surveys.
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Steffen, Karin | |||
| 2 | Identification | ID | Steffen, Karin | unified_ID | ||
| 3 | Identification | ID | Steffen, Karin | Col_no DFO | ||
| 4 | Cruise/expedition | Expedition | Steffen, Karin | |||
| 5 | Set | Set | Steffen, Karin | |||
| 6 | Species | Species | Steffen, Karin | |||
| 7 | DEPTH, water | Depth water | m | Steffen, Karin | Geocode | |
| 8 | LATITUDE | Latitude | Steffen, Karin | Geocode | ||
| 9 | LONGITUDE | Longitude | Steffen, Karin | Geocode | ||
| 10 | Temperature, water | Temp | °C | Steffen, Karin | mean | |
| 11 | Salinity | Sal | Steffen, Karin | PSU, mean | ||
| 12 | Gear | Gear | Steffen, Karin | |||
| 13 | Year of observation | Year obs | a AD | Steffen, Karin | ||
| 14 | DATE/TIME | Date/Time | Steffen, Karin | Geocode | ||
| 15 | Code | Code | Steffen, Karin | LC-MS, HILIC positive | ||
| 16 | Code | Code | Steffen, Karin | LC-MS, HILIC negative | ||
| 17 | Code | Code | Steffen, Karin | LC-MS, RP positive | ||
| 18 | Code | Code | Steffen, Karin | LC-MS, RP negative | ||
| 19 | Accession number, genetics | Access no gen | Steffen, Karin | NCBI SRA# |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
739 data points