Citation:

PANGAEA.909246

Name: Collection data, 16S microbiome and metabolome of Geodia barretti, Stryphnus fortis and Weberella bursa, in the Davis Strait
Published: 2019-11-29
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Deep-sea; Geodia barretti; marine sponges; metabolomics; microbiome; Stryphnus fortis; Weberella bursa

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Abstract:

Collection data of the marine sponge specimens studied; three species: Geodia barretti, Stryphnus fortis and Weberella bursa. Collection data includes locality, depth, salinity, bottom temperature, gear, date, cruise and station# and a collection number for every specimen (DFO Canada collections). NCBI SRA# of the 16S gene amplicon sequencing of their microbiome. Numbers of the UPLC-HRMS runs (four different modes for every specimen: HILIC+, HILIC-, RP+ and RP-). The raw UPLC-HRMS datasets are deposited in the repository metabolights (www.ebi.ac.uk/metabolights/MTBLS1388). QC runs are Quality Control runs for the UPLC-HRMS experiment (also deposited in metabolights).

Keyword(s):

Deep-sea; Geodia barretti; marine sponges; metabolomics; microbiome; Stryphnus fortis; Weberella bursa

Related to:

Steffen, Karin; Indraningrat, Anak Agung Gede; Erngren, Ida; Haglöf, Jakob; Becking, Leontine E; Smidt, Hauke; Yashayaev, Igor M; Kenchington, Ellen L; Pettersson, Curt; Cárdenas, Paco; Sipkema, Detmer (2022): Oceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges. Scientific Reports, 12, 3356, https://doi.org/10.1038/s41598-022-07292-3

Project(s):

Deep-sea Sponge Grounds Ecosystems of the North Atlantic (SponGES)

Funding:

Horizon 2020 (H2020), grant/award no. 679849 : Deep-sea Sponge Grounds Ecosystems of the North Atlantic

Coverage:

Median Latitude: 63.085783 * Median Longitude: -60.213565 * South-bound Latitude: 61.147942 * West-bound Longitude: -68.780770 * North-bound Latitude: 66.382450 * East-bound Longitude: -57.965730

Date/Time Start: 2011-09-24T00:00:00 * Date/Time End: 2015-09-23T00:00:00

Minimum DEPTH, water: 244 m * Maximum DEPTH, water: 1476 m

Event(s):

PAA2011007_Gb4 * Latitude: 61.908942 * Longitude: -63.637153 * Date/Time: 2011-10-09T00:00:00 * Elevation: -514.0 m * Campaign: * Basis: Paamiut

PAA2011007_Gb6 * Latitude: 61.147942 * Longitude: -63.560678 * Date/Time: 2011-09-29T00:00:00 * Elevation: -563.0 m * Campaign: * Basis: Paamiut

PAA2011007_Gb10 * Latitude: 62.628140 * Longitude: -60.925362 * Date/Time: 2011-10-11T00:00:00 * Elevation: -801.0 m * Campaign: * Basis: Paamiut

Comment:

Sponge specimens were collected in the Davis Strait area between 2011 and 2015 by the crews of the R/V Pâmiut of the Greenland Institute of Natural Resources during cruises conducted by Fisheries and Oceans Canada. Sponges were dredged using Alfredo or Cosmos benthic trawls at depths between 244 m and 1481 m. Collectors on board were Dr. Wojciech Walkusz and Tim Siferd, Fisheries & Oceans Canada (DFO), Central and Arctic Division, Winnipeg, Manitoba, during their multispecies stock assessment surveys.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Comment
1	Event label	Event		Steffen, Karin
2	Identification	ID		Steffen, Karin	unified_ID
3	Identification	ID		Steffen, Karin	Col_no DFO
4	Cruise/expedition	Expedition		Steffen, Karin
5	Set	Set		Steffen, Karin
6	Species	Species		Steffen, Karin
7	DEPTH, water	Depth water	m	Steffen, Karin	Geocode
8	LATITUDE	Latitude		Steffen, Karin	Geocode
9	LONGITUDE	Longitude		Steffen, Karin	Geocode
10	Temperature, water	Temp	°C	Steffen, Karin	mean
11	Salinity	Sal		Steffen, Karin	PSU, mean
12	Gear	Gear		Steffen, Karin
13	Year of observation	Year obs	a AD	Steffen, Karin
14	DATE/TIME	Date/Time		Steffen, Karin	Geocode
15	Code	Code		Steffen, Karin	LC-MS, HILIC positive
16	Code	Code		Steffen, Karin	LC-MS, HILIC negative
17	Code	Code		Steffen, Karin	LC-MS, RP positive
18	Code	Code		Steffen, Karin	LC-MS, RP negative
19	Accession number, genetics	Access no gen		Steffen, Karin	NCBI SRA#

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

739 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 ID (unified_ID)	3 ID (Col_no DFO)	4 Expedition	5 Set	6 Species	7 Depth water [m]	8 Latitude	9 Longitude	10 Temp [°C] (mean)	11 Sal (PSU, mean)	12 Gear	13 Year obs [a AD]	14 Date/Time	15 Code (LC-MS, HILIC positive)	16 Code (LC-MS, HILIC negative)	17 Code (LC-MS, RP positive)	18 Code (LC-MS, RP negative)	19 Access no gen (NCBI SRA#)
PAA2013008_Gb12	Gb12	157	PAA2013008	44	Geodia barretti	1238	62.851130	-59.990520			Alfredo	2013	2013-09-27	IE_20170918_04501	IE_20170919_03601	IE_20171002_05101	IE_20171003_04101	insdc:SRX3993962
PAA2013008_Gb1	Gb1	169	PAA2013008	46	Geodia barretti	407	62.882930	-61.292130	2.41	34.49	Alfredo	2013	2013-09-27	IE_20170918_02801	IE_20170919_04001	IE_20171002_04001	IE_20171003_01801	insdc:SRX3993939
PAA2013008_Gb2	Gb2	174	PAA2013008	47	Geodia barretti	440	62.765430	-61.430200	2.77	34.59	Alfredo	2013	2013-09-28	IE_20170918_05601	IE_20170919_06501	IE_20171002_05701	IE_20171003_01601	insdc:SRX3993936
PAA2013008_Gb8	Gb8	176	PAA2013008	48	Geodia barretti	700	62.780330	-61.152170	3.67	34.80	Alfredo	2013	2013-09-28	IE_20170918_06601	IE_20170919_06801	IE_20171002_07001	IE_20171003_04801	insdc:SRX3993945
PAA2013008_Gb9	Gb9	177	PAA2013008	50	Geodia barretti	744	62.589300	-61.041980	3.87	34.83	Alfredo	2013	2013-09-28	IE_20170918_07201	IE_20170919_06601	IE_20171002_04301	IE_20171003_03401	insdc:SRX3993957
PAA2011007_Gb15	Gb15	255	PAA2011007	126	Geodia barretti	563	62.552910	-61.373675	3.63	34.75	Alfredo	2011	2011-10-10	IE_20170918_02901	IE_20170919_03501	IE_20171002_06301	IE_20171003_02501
PAA2011007_Gb10	Gb10	262	PAA2011007	128	Geodia barretti	801	62.628140	-60.925362	4.08	34.89	Alfredo	2011	2011-10-11	IE_20170918_04201	IE_20170919_02401	IE_20171002_04201	IE_20171003_05101	insdc:SRX3993944
PAA2014007_Gb13	Gb13	278	PAA2014007	125	Geodia barretti	1332	62.518400	-59.970517	3.60	34.92	Alfredo	2014	2014-10-13	IE_20170918_06401	IE_20170919_01601	IE_20171002_06101	IE_20171003_02801	insdc:SRX3993959
PAA2015007_Gb17	Gb17	289	PAA2015007	60	Geodia barretti	557	62.426280	-61.256540	3.65	34.74	Alfredo	2015	2015-09-20	IE_20170918_06101	IE_20170919_06401	IE_20171002_02901	IE_20171003_05301
PAA2015007_Gb7	Gb7	299	PAA2015007	62	Geodia barretti	667	62.688040	-61.282640	3.73	34.80	Alfredo	2015	2015-09-20	IE_20170918_05001	IE_20170919_04201	IE_20171002_02501	IE_20171003_03601	insdc:SRX3993941
PAA2013008_Gb14	Gb14	302	PAA2013008	141	Geodia barretti	1427	62.053900	-60.091820	3.78	34.92	Alfredo	2013	2013-10-11	IE_20170918_02701	IE_20170919_01401	IE_20171002_03701	IE_20171003_03701	insdc:SRX3993958
PAA2013008_Gb18	Gb18	305	PAA2013008	142	Geodia barretti	1370	62.247250	-60.049600	3.70	34.92	Alfredo	2013	2013-10-12	IE_20170918_07401	IE_20170919_06701	IE_20171002_06901	IE_20171003_06901
PAA2013008_Gb19	Gb19	31	PAA2013008	10	Geodia barretti	542	65.448000	-58.183230	2.05	34.54	Alfredo	2013	2013-09-23	IE_20170918_05401	IE_20170919_03001	IE_20171002_01801	IE_20171003_06201
PAA2014007_Gb3	Gb3	321	PAA2014007	136	Geodia barretti	483	62.199230	-61.219200	3.70	34.70	Alfredo	2014	2014-10-15	IE_20170918_05501	IE_20170919_03301	IE_20171002_03301	IE_20171003_02301	insdc:SRX3993937
PAA2011007_Gb20	Gb20	533	PAA2011007	23	Geodia barretti	1462	62.551802	-59.527228			Alfredo	2011	2011-09-26	IE_20170918_03901	IE_20170919_04401	IE_20171002_02701	IE_20171003_05601
PAA2011007_Gb21	Gb21	634	PAA2011007	139	Geodia barretti	528	63.938048	-60.027428			Alfredo	2011	2011-10-12	IE_20170918_06501	IE_20170919_02301	IE_20171002_01501	IE_20171003_06801
	QC1													IE_20170918_02001	IE_20170919_01301	IE_20171002_01401	IE_20171003_01301
	QC2													IE_20170918_02601	IE_20170919_01901	IE_20171002_02001	IE_20171003_02001
	QC3													IE_20170918_03201	IE_20170919_02501	IE_20171002_02601	IE_20171003_02601
	QC4													IE_20170918_03801	IE_20170919_03201	IE_20171002_03201	IE_20171003_03201
	QC5													IE_20170918_04401	IE_20170919_03801	IE_20171002_03801	IE_20171003_03801
	QC6													IE_20170918_05101	IE_20170919_04501	IE_20171002_04401	IE_20171003_04401
	QC7													IE_20170918_05701	IE_20170919_05101	IE_20171002_05001	IE_20171003_05001
	QC8													IE_20170918_06301	IE_20170919_05701	IE_20171002_05601	IE_20171003_05701
	QC9													IE_20170918_07001	IE_20170919_06301	IE_20171002_06201	IE_20171003_06401
	QC10													IE_20170918_07601	IE_20170919_06901	IE_20171002_06801	IE_20171003_07001
	QC11															IE_20171002_07201
PAA2011007_Sf4	Sf4	103	PAA2011007	32	Stryphnus fortis	733	62.170797	-60.781817	3.78	34.82	Alfredo	2011	2011-09-27	IE_20170918_04001	IE_20170919_02901	IE_20171002_02101	IE_20171003_03301	insdc:SRX3993927
PAA2013008_Sf6	Sf6	159	PAA2013008	45	Stryphnus fortis	899	62.983470	-60.309270	4.08	34.92	Alfredo	2013	2013-09-27	IE_20170918_06901	IE_20170919_02801	IE_20171002_06501	IE_20171003_02401	insdc:SRX3993946
PAA2014007_Sf3	Sf3	221	PAA2014007	95	Stryphnus fortis	627	66.382450	-58.317417	1.93	34.53	Alfredo	2014	2014-10-06	IE_20170918_06701	IE_20170919_05801	IE_20171002_05401	IE_20171003_05401	insdc:SRX3993926
PAA2014007_Sf15	Sf15	275	PAA2014007	124	Stryphnus fortis	1476	62.522033	-59.398520	3.65	34.92	Alfredo	2014	2014-10-13	IE_20170918_02501	IE_20170919_02601	IE_20171002_04101	IE_20171003_06501	insdc:SRX3993938
PAA2013008_Sf2	Sf2	280	PAA2013008	135	Stryphnus fortis	572	61.767350	-61.728320	4.57	34.89	Alfredo	2013	2013-10-10	IE_20170918_02201	IE_20170919_01801	IE_20171002_07101	IE_20171003_02201	insdc:SRX3993935
PAA2014007_Sf12	Sf12	284	PAA2014007	126	Stryphnus fortis	1324	62.360870	-60.073230	3.59	34.92	Alfredo	2014	2014-10-13	IE_20170918_03701	IE_20170919_02701	IE_20171002_03601	IE_20171003_04301	insdc:SRX3993952
PAA2011007_Sf7	Sf7	292	PAA2011007	132	Stryphnus fortis	887	63.247158	-60.165435	4.02	34.88	Alfredo	2011	2011-10-11	IE_20170918_07301	IE_20170919_06101	IE_20171002_05801	IE_20171003_05901	insdc:SRX3993949
PAA2013008_Sf13	Sf13	296	PAA2013008	141	Stryphnus fortis	1427	62.053900	-60.091820	3.78	34.92	Alfredo	2013	2013-10-11	IE_20170918_05901	IE_20170919_02001	IE_20171002_04701	IE_20171003_03101	insdc:SRX3993955
PAA2014007_Sf1	Sf1	320	PAA2014007	136	Stryphnus fortis	483	62.199230	-61.219200	3.70	34.70	Alfredo	2014	2014-10-15	IE_20170918_07501	IE_20170919_03401	IE_20171002_01701	IE_20171003_04701	insdc:SRX3993934
PAA2013008_Sf10	Sf10	339	PAA2013008	151	Stryphnus fortis	1128	62.850720	-58.784820	3.93	34.92	Alfredo	2013	2013-10-13	IE_20170918_04801	IE_20170919_01701	IE_20171002_06401	IE_20171003_01701	insdc:SRX3993950
PAA2011007_Sf14	Sf14	43	PAA2011007	16	Stryphnus fortis	1448	63.249477	-57.965730	3.58	34.92	Alfredo	2011	2011-09-25	IE_20170918_06201	IE_20170919_05301	IE_20171002_06601	IE_20171003_06101	insdc:SRX3993954
PAA2014007_Sf5	Sf5	495	PAA2014007	141	Stryphnus fortis	829	62.847070	-60.536980	4.09	34.89	Alfredo	2014	2014-10-16	IE_20170918_03501	IE_20170919_03901	IE_20171002_02201	IE_20171003_06601	insdc:SRX3993947
PAA2011007_Sf11	Sf11	544	PAA2011007	22	Stryphnus fortis	1189	62.528587	-59.202887	3.88	34.91	Alfredo	2011	2011-09-26	IE_20170918_02101	IE_20170919_05401	IE_20171002_03501	IE_20171003_04601	insdc:SRX3993953
PAA2013008_Wb4	Wb4	120	PAA2013008	32	Weberella bursa	471	64.580650	-59.137680	1.99	34.47	Alfredo	2013	2013-09-26	IE_20170918_03101	IE_20170919_05501	IE_20171002_01601	IE_20171003_05501	insdc:SRX3993964
PAA2013008_Wb17	Wb17	18	PAA2013008	8	Weberella bursa	645	65.023630	-58.176350	2.97	34.71	Alfredo	2013	2013-09-23	IE_20170918_05301	IE_20170919_04101	IE_20171002_05201	IE_20171003_01901
PAA2014007_Wb13	Wb13	250	PAA2014007	116	Weberella bursa	1061	63.385417	-58.563250	3.79	34.91	Alfredo	2014	2014-10-12	IE_20170918_03301	IE_20170919_06001	IE_20171002_03101	IE_20171003_04201	insdc:SRX3993930
PAA2013008_Wb1	Wb1	251	PAA2013008	128	Weberella bursa	244	61.576880	-66.086600	0.37	33.29	Cosmos	2013	2013-10-08	IE_20170918_03001	IE_20170919_03701	IE_20171002_04501	IE_20171003_01401	insdc:SRX3993965
PAA2011007_Wb15	Wb15	275	PAA2011007	131	Weberella bursa	1107	63.101907	-59.966512	3.82	34.91	Alfredo	2011	2011-10-11	IE_20170918_05801	IE_20170919_02101	IE_20171002_05301	IE_20171003_01501	insdc:SRX3993932
PAA2011007_Wb10	Wb10	317	PAA2011007	134	Weberella bursa	820	63.548330	-59.918103	4.12	34.91	Alfredo	2011	2011-10-11	IE_20170918_04901	IE_20170919_05001	IE_20171002_02801	IE_20171003_02101	insdc:SRX3993961
PAA2013008_Wb16	Wb16	343	PAA2013008	152	Weberella bursa	1271	63.069170	-58.529700	3.81	34.92	Alfredo	2013	2013-10-13	IE_20170918_06001	IE_20170919_04801	IE_20171002_01901	IE_20171003_05201	insdc:SRX3993933
PAA2014007_Wb3	Wb3	352	PAA2014007	142	Weberella bursa	441	63.027700	-60.672717	3.79	34.72	Alfredo	2014	2014-10-16	IE_20170918_04301	IE_20170919_01501	IE_20171002_05901	IE_20171003_06701	insdc:SRX3993963
PAA2013008_Wb11	Wb11	353	PAA2013008	158	Weberella bursa	876	63.696000	-58.775150	4.05	34.92	Alfredo	2013	2013-10-14	IE_20170918_04701	IE_20170919_05901	IE_20171002_04801	IE_20171003_02701	insdc:SRX3993928
PAA2011007_Wb5	Wb5	361	PAA2011007	142	Weberella bursa	487	64.298317	-59.251742	2.32	34.56	Alfredo	2011	2011-10-12	IE_20170918_02301	IE_20170919_06201	IE_20171002_03401	IE_20171003_04501	insdc:SRX3993969
PAA2014007_Wb6	Wb6	427	PAA2014007	155	Weberella bursa	560	65.318170	-58.177170	2.31	34.57	Alfredo	2014	2014-10-17	IE_20170918_07101	IE_20170919_05601	IE_20171002_04601	IE_20171003_03001	insdc:SRX3993970
PAA2014007_Wb7	Wb7	528	PAA2014007	151	Weberella bursa	632	64.561320	-58.680830	3.05	34.70	Alfredo	2014	2014-10-17	IE_20170918_04101	IE_20170919_05201	IE_20171002_06001	IE_20171003_03501	insdc:SRX3993968
PAA2011007_Wb12	Wb12	53	PAA2011007	19	Weberella bursa	918	63.356860	-59.225978	3.96	34.91	Alfredo	2011	2011-09-25	IE_20170918_04601	IE_20170919_04301	IE_20171002_03001	IE_20171003_06001	insdc:SRX3993929
PAA2011007_Wb14	Wb14	58	PAA2011007	21	Weberella bursa	1104	62.690007	-58.942747	3.77	34.91	Alfredo	2011	2011-09-26	IE_20170918_03401	IE_20170919_04701	IE_20171002_04901	IE_20171003_03901	insdc:SRX3993931
PAA2011007_Wb2	Wb2	658	PAA2011007	67	Weberella bursa	331	61.316352	-68.780770	2.23	34.13	Cosmos	2011	2011-10-03	IE_20170918_06801	IE_20170919_02201	IE_20171002_02401	IE_20171003_02901	insdc:SRX3993966
PAA2013008_Wb8	Wb8	7	PAA2013008	5	Weberella bursa	668	64.527570	-58.669030	3.86	34.85	Alfredo	2013	2013-09-23	IE_20170918_03601	IE_20170919_04601	IE_20171002_05501	IE_20171003_05801	insdc:SRX3993967
PAA2015007_Gb11	Gb11	126	PAA2015007	32	Geodia barretti	1213	62.870860	-58.626200	3.58	34.92	Alfredo	2015	2015-09-16					insdc:SRX3993956
PAA2011007_Gb4	Gb4	225	PAA2011007	114	Geodia barretti	514	61.908942	-63.637153	4.52	34.82	Alfredo	2011	2011-10-09					insdc:SRX3993942
PAA2014007_Gb5	Gb5	514	PAA2014007	152	Geodia barretti	561	64.891000	-58.551267	2.99	34.70	Alfredo	2014	2014-10-17					insdc:SRX3993943
PAA2011007_Gb6	Gb6	127	PAA2011007	39	Geodia barretti	563	61.147942	-63.560678	4.44	34.82	Alfredo	2011	2011-09-29					insdc:SRX3993940
PAA2015007_Sf8	Sf8	327	PAA2015007	68	Stryphnus fortis	916	63.098560	-60.221100	3.88	34.90	Alfredo	2015	2015-09-23					insdc:SRX3993948
PAA2015007_Sf9	Sf9	164	PAA2015007	38	Stryphnus fortis	1036	62.655480	-59.158160	3.64	34.91	Alfredo	2015	2015-09-17					insdc:SRX3993951
PAA2011007_Wb9	Wb9	18	PAA2011007	8	Weberella bursa	728	64.525410	-58.406818	4.01	34.91	Alfredo	2011	2011-09-24					insdc:SRX3993960