Citation:

PANGAEA.905212

Name: CARD-FISH cell counts of taxonomic bacterial and archaeal groups in Fram Strait during PS99.2
Published: 2019-08-26
License: https://creativecommons.org/licenses/by/4.0/
Keywords: CARD-FISH; cell counts; Fram Strait; seawater

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Abstract:

With CARD-FISH we quantified 16 microbial taxonomic groups in different water depths, from surface to the deep sea. We investigated 11 stations in LTER-HAUSGARTEN and adjacent stations in Fram Strait.

Keyword(s):

CARD-FISH; cell counts; Fram Strait; seawater

Pala, Claudia; Bienhold, Christina; Boetius, Antje; Salman-Carvalho, Verena: CARD-FISH cell counts of Bacteria and Archaea in sediments of HAUSGARTEN, Fram Strait, from Polarstern cruise PS85. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.905210

Salman-Carvalho, Verena (2019): CARD-FISH counts of the water column and sediment at HAUSGARTEN, Fram Strait. PANGAEA, https://doi.org/10.1594/PANGAEA.903569

Coverage:

Median Latitude: 79.228867 * Median Longitude: 2.785411 * South-bound Latitude: 78.816000 * West-bound Longitude: -5.409330 * North-bound Latitude: 79.921170 * East-bound Longitude: 6.088500

Date/Time Start: 2016-06-26T04:57:00 * Date/Time End: 2016-07-10T02:23:00

Minimum DEPTH, water: 13 m * Maximum DEPTH, water: 5500 m

Event(s):

PS99/042-1 (HG_IV) * Latitude: 79.066000 * Longitude: 4.184330 * Date/Time: 2016-06-26T04:57:00 * Elevation: -2457.9 m * Location: North Greenland Sea * Campaign: (ARK-XXX/1.2) * Basis: * Method/Device: (CTD-RO_UVP)

PS99/042-11 (HG_IV) * Latitude: 79.065170 * Longitude: 4.172830 * Date/Time: 2016-06-27T02:36:00 * Elevation: -2468.0 m * Location: North Greenland Sea * Campaign: (ARK-XXX/1.2) * Basis: * Method/Device: (CTD-RO)

PS99/044-1 (HG_V) * Latitude: 79.067170 * Longitude: 3.665330 * Date/Time: 2016-06-28T05:16:00 * Elevation: -3081.9 m * Location: North Greenland Sea * Campaign: (ARK-XXX/1.2) * Basis: * Method/Device: (CTD-RO)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Salman-Carvalho, Verena
2	DEPTH, water	Depth water	m	Salman-Carvalho, Verena		Geocode
3	Microbial abundance, cells	Microbial abund	#/ml	Salman-Carvalho, Verena	Fluorescence determination of DAPI stain
4	Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe	EUB338 I-III	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
5	Archaea, targed with ARCH915 oligonucleotide FISH-probe	ARCH915	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
6	Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe	Gam42a	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
7	Deltaproteobacteria, targeted with the DELTA495 mix oligonucleotide FISH-probes	DELTA495 mix	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
8	Bacteroidetes, targeted with CF968 oligonucleotides FISH-probe	CF968	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
9	Chloroflexi, targeted with CFX1223 and GNSB941 oligonucleotides FISH-probe	CFX1223 + GNSB941	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
10	Verrucomicrobiales, targeted with EUB338 III oligonucleotides FISH-probe	EUB338 III	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
11	SAR11 mix oligonucleotide FISH-probes targeting SAR11 clade	SAR11	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
12	Pseudoalteromonas, targeted with PSA184 oligonucleotide FISH-probe	PSA184	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
13	SAR202 clade, targeted with SAR202-312R oligonucleotide FISH-probe	SAR202-312R	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
14	SAR406 clade, targeted with SAR406-97 oligonucleotide FISH-probe	SAR406	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
15	SAR324 Marine group B, targeted with SAR324-R-625 oligonucleotide FISH-probe	SAR324-R-625	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
16	Opitutales, targeted with OPI346 oligonucleotides FISH-probe	OPI346	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
17	Crenarchaeota marine group I, targeted with Cren554 oligonucleotide FISH-probe	Cren554	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
18	Polaribacter, targeted with POL740 oligonucleotides FISH-probe	POL740	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
19	Rhodobacteraceae, targeted with ROS536 oligonucleotides FISH-probe	ROS536	#/ml	Salman-Carvalho, Verena	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

748 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 Depth water [m]	3 Microbial abund [#/ml]	4 EUB338 I-III [#/ml]	5 ARCH915 [#/ml]	6 Gam42a [#/ml]	7 DELTA495 mix [#/ml]	8 CF968 [#/ml]	9 CFX1223 + GNSB941 [#/ml]	10 EUB338 III [#/ml]	11 SAR11 [#/ml]	12 PSA184 [#/ml]	13 SAR202-312R [#/ml]	14 SAR406 [#/ml]	15 SAR324-R-625 [#/ml]	16 OPI346 [#/ml]	17 Cren554 [#/ml]	18 POL740 [#/ml]	19 ROS536 [#/ml]
PS99/066-2	17	2983675	1233540	38275	109034	10574	270848	9359	112610	1420660	13125	4976	983	12384	118197	14345	55895	207561
PS99/066-5	100	729719	205845	49239	10366	28458	15572	2776	5940	234086	6800	5010	1659	10102	16354	40977	3225	26249
PS99/066-5	500	132034	45843	19063	2654	6160	1279	2612	1829	25410	1208	3831	88	6706	2016	1736	2119	5998
PS99/066-5	1253	86308	30960	9639	1318	11329	618	2018	1513	9537	1429	3842	231	5031	2248	791	2886	4490
PS99/057-1	28	2118520	1440934	28872	284345	6520	482479	97442	201891	978442	83033	3732	1601	7775	206009	5730	115644	65722
PS99/057-1	100	687804	383640	66693	20318	24369	32461	15342	14596	248212	7049	3732	937	8293	16088	40553	7108	17459
PS99/057-1	1000	81885	38674	13892	2057	5971	995	2768	1613	17364	770	2370	212	5652	1270	451	1148	9978
PS99/057-1	1492	77976	29328	10431	1733	10710	426	3309	1731	13113	964	2754	498	5016	3461	445	1924	5446
PS99/042-11	28	612880	395143	5687	98041	28258	123271	35556	8920	153785	24473	1451	804	2342	11131	4763	50400	22628
PS99/042-11	100	498188	211134	33757	21689	43174	21514	19117	3389	229424	17436	4801	885	8721	6634	40833	6729	8542
PS99/042-1	1000	107547	51160	12478	995	5314	835	5515	1924	22391	962	4893	452	5131	1524	566	1337	8701
PS99/042-1	2399	54071	15610	7215	320	5971	178	2047	717	8189	933	2076	265	2985	1373	314	1208	2209
PS99/044-1	25	996558	304859	5981	148836	5023	48692	980	128176	265849	15091	1912	1651	2962	54421	3080	20116	36796
PS99/044-1	100	436104	155646	66123	10848	6184	8796	2634	13822	125056	2132	3178	109	1980	5416	2102	5065	8473
PS99/044-1	2600	30114	6209	2998	113	2570	102	1003	104	4139	340	2033	32	1488	209	200	502	1082
PS99/044-1	3039	16448	4774	2281	106	2428	248	560	116	4774	179	934	36	1259	284	317	476	3007
PS99/046-1	24	1303095	735515	16428	140698	3483	143979	1646	153463	465828	21646	1496	1422	3080	65770	4905	82358	30506
PS99/046-1	100	477485	164708	57405	14690	13269	23324	3331	13932	129573	4834	4102	474	7108	7361	39243	7819	9241
PS99/046-1	1005	65923	21788	8998	646	1990	512	1990	705	14927	511	2875	85	3317	912	59	881	3797
PS99/046-1	3772	36551	19027	4716	1219	5523	318	1161	498	11544	547	3372	332	2609	896	127	2265	3898
PS99/059-2	24	975459	771698	10267	207842	20336	221959	8086	52522	352979	21251	2903	1307	4607	51509	1875	126248	28503
PS99/059-2	100	853552	193029	62091	22643	18848	36848	3236	17519	177864	4327	4854	1601	9122	19177	29932	11027	20499
PS99/059-2	1000	60566	13932	5365	629	6966	34	1570	421	10947	864	2499	786	4619	549	446	961	3341
PS99/059-2	2500	35329	4885	4820	663	3682	230	1413	498	8625	1225	2050	332	2162	1380	177	1340	5059
PS99/059-2	5500	26000	10564	2709	209	3085	142	1169	415	7578	482	1095	108	1382	919	878	1564	4755
PS99/051-2	13	357650	193871	23220	49189	32478	100586	5564	3317	115035	26537	4387	151	5667	51509	2342	76081	14142
PS99/051-2	101	230478	84326	28024	11117	4166	13146	3673	3088	40280	4572	3317	343	8803	19177	4474	3071	15954
PS99/051-2	971	41464	17166	5613	161	2059	133	2642	675	9792	1057	2093	137	4146	549	177	867	6469
PS99/048-11	24	336832	239501	18183	14202	10927	23128	3214	9230	255954	10574	4043	1303	12692	1380	13103	7924	29722
PS99/048-11	100	465229	335951	59354	23948	12391	47345	6198	7740	163114	5906	6809	577	7924	919	10468	11861	50693
PS99/048-1	1001	97306	37031	17011	698	3713	559	2016	1373	20637	1390	2194	185	5431	51509	367	1068	6426
PS99/048-1	2527	49395	8253	2344	118	1697	938	663	396	7320	275	1191	219	2786	19177	633	1485	2837
PS99/054-1	34	1827932	962386	66846	85210	30728	156974	26188	100937	609960	19177	4539	5110	7262	101648	9583	28551	61311
PS99/054-1	100	1011001	454700	67534	54636	34278	58098	28694	28154	271395	31123	2571	1343	6172	29174	27201	10425	22115
PS99/054-1	1000	69340	25825	9744	1686	3589	746	2803	1749	14321	746	2925	69	4851	1417	199	1031	11687
PS99/054-1	2701	31928	11878	5894	533	2401	153	2143	538	7159	391	2858	459	2612	888	354	1378	6469
PS99/055-1	22	1692215	1030815	17830	226290	15099	370542	17139	97364	392534	16009	5529	1555	7298	97633	4285	126053	62197
PS99/055-1	100	643490	248186	60262	30613	15501	42928	12795	9330	163598	2749	4581	1070	5564	12750	33512	11805	24611
PS99/055-7	1000	98122	31608	15723	1932	4202	1338	2022	1622	17723	1109	2729	218	5681	2064	148	2574	10121
PS99/055-7	2501	35463	14656	4727	1555	3572	782	1389	663	11806	1410	2159	655	4146	1290	463	1457	7376
PS99/053-2	19	1600345	1213122	9314	306046	11389	89896	2156	84078	253903	3750	2488	1720	4146	74509	2860	248125	48474
PS99/053-2	101	687065	252797	59307	23718	17332	30257	3857	6824	239114	10532	2931	585	7531	9675	30549	9549	17734
PS99/053-2	1004	94179	38505	13719	2076	4066	1156	2388	1098	20260	1161	1443	179	5894	1373	394	1297	13269
PS99/053-2	2427	36627	8956	6740	770	2592	290	1990	759	6935	931	2531	181	2218	393	318	954	7124