Lagostina, Elisa (2018): nuc rDNA ITS1-5.8S-ITS2 region (ITS) sequences of 33 haplotypes (14 for U. antarctica and 19 for U. aurantiacoatra) with sampling locality information [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.892969, In: Lagostina, E (2018): Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair [dataset publication series]. PANGAEA, https://doi.org/10.1594/PANGAEA.892970
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Related to:
Lagostina, Elisa; Dal Grande, Francesco; Ott, Sieglinde; Printzen, Christian (2017): Fungus-specific SSR markers in the Antarctic lichens Usnea antarctica and U. aurantiacoatra (Parmeliaceae, Ascomycota). Applications in Plant Sciences, 5(9), 1700054, https://doi.org/10.3732/apps.1700054
Original version:
Project(s):
Funding:
German Research Foundation (DFG), grant/award no. 5472008: Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas
Coverage:
Median Latitude: -61.937319 * Median Longitude: -57.799861 * South-bound Latitude: -62.252900 * West-bound Longitude: -58.992750 * North-bound Latitude: -61.216530 * East-bound Longitude: -55.358780
Date/Time Start: 2015-12-18T00:00:00 * Date/Time End: 2016-04-08T00:00:00
Event(s):
Elephant_Is_U-a * Latitude: -61.222280 * Longitude: -55.359680 * Date/Time: 2016-02-08T00:00:00 * Location: Elephant Island * Method/Device: Biological sample (BIOS)
Comment:
nuc rDNA ITS1-5.8S-ITS2 region (ITS) sequences of 33 haplotypes (14 for U. antarctica and 19 for U. aurantiacoatra) deposited also in Genbank (ID MG200275 - MG200307). The ITS sequences were amplified using primers ITS1F (Gardes and Bruns, 1993) and ITS4 (White et al., 1990). The total alignment was 666 bp long and included an intron of 216 bp length 226 bp from the 3' end of the small subunit of the ribosomal RNA. Our alignment included 33 polymorphic sites, 15 of them in the intron. The dataset was used to generate and haplotype network.
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Sample ID | Sample ID | Lagostina, Elisa | |||
| 2 | Latitude of event | Latitude | Lagostina, Elisa | |||
| 3 | Longitude of event | Longitude | Lagostina, Elisa | |||
| 4 | Date/Time of event | Date/Time | Lagostina, Elisa | |||
| 5 | Species | Species | Lagostina, Elisa | |||
| 6 | Continent | Cont | Lagostina, Elisa | |||
| 7 | Area/locality | Area | Lagostina, Elisa | |||
| 8 | Name | Name | Lagostina, Elisa | of collector | ||
| 9 | Code | Code | Lagostina, Elisa | of herbarium | ||
| 10 | Uniform resource locator/link to file | URL file | Lagostina, Elisa | link to sequence in txt file |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
231 data points