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Lagostina, Elisa (2018): nuc rDNA ITS1-5.8S-ITS2 region (ITS) sequences of 33 haplotypes (14 for U. antarctica and 19 for U. aurantiacoatra) with sampling locality information [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.892969, In: Lagostina, E (2018): Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair [dataset publication series]. PANGAEA, https://doi.org/10.1594/PANGAEA.892970

Always quote citation above when using data! You can download the citation in several formats below.

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Related to:
Lagostina, Elisa; Dal Grande, Francesco; Ott, Sieglinde; Printzen, Christian (2017): Fungus-specific SSR markers in the Antarctic lichens Usnea antarctica and U. aurantiacoatra (Parmeliaceae, Ascomycota). Applications in Plant Sciences, 5(9), 1700054, https://doi.org/10.3732/apps.1700054
Original version:
Original xlsx with with metadata and Usnea sequences
Project(s):
Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas (SPP1158)
Funding:
German Research Foundation (DFG), grant/award no. 5472008: Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas
Coverage:
Median Latitude: -61.937319 * Median Longitude: -57.799861 * South-bound Latitude: -62.252900 * West-bound Longitude: -58.992750 * North-bound Latitude: -61.216530 * East-bound Longitude: -55.358780
Date/Time Start: 2015-12-18T00:00:00 * Date/Time End: 2016-04-08T00:00:00
Event(s):
Elephant_Is_U-a * Latitude: -61.222280 * Longitude: -55.359680 * Date/Time: 2016-02-08T00:00:00 * Location: Elephant Island * Method/Device: Biological sample (BIOS)
Elephant_Is_U-au_2 * Latitude: -61.216530 * Longitude: -55.358780 * Date/Time: 2016-02-04T00:00:00 * Location: Elephant Island * Method/Device: Biological sample (BIOS)
King_George_Is_1 * Latitude: -62.237000 * Longitude: -58.658200 * Date/Time: 2015-12-18T00:00:00 * Location: King George Island, Antarctica * Method/Device: Biological sample (BIOS) * Comment: Collector(s): E. Lagostina & B. Kanz
Comment:
nuc rDNA ITS1-5.8S-ITS2 region (ITS) sequences of 33 haplotypes (14 for U. antarctica and 19 for U. aurantiacoatra) deposited also in Genbank (ID MG200275 - MG200307). The ITS sequences were amplified using primers ITS1F (Gardes and Bruns, 1993) and ITS4 (White et al., 1990). The total alignment was 666 bp long and included an intron of 216 bp length 226 bp from the 3' end of the small subunit of the ribosomal RNA. Our alignment included 33 polymorphic sites, 15 of them in the intron. The dataset was used to generate and haplotype network.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1 Sample IDSample IDLagostina, Elisa
2 Latitude of eventLatitudeLagostina, Elisa
3 Longitude of eventLongitudeLagostina, Elisa
4 Date/Time of eventDate/TimeLagostina, Elisa
5 SpeciesSpeciesLagostina, Elisa
6 ContinentContLagostina, Elisa
7 Area/localityAreaLagostina, Elisa
8 NameNameLagostina, Elisaof collector
9 CodeCodeLagostina, Elisaof herbarium
10 Uniform resource locator/link to fileURL fileLagostina, Elisalink to sequence in txt file
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
231 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 
Sample ID		2 
Latitude		3 
Longitude		4 
Date/Time		5 
Species		6 
Cont		7 
Area		8 
Name		9 
Code		10 
URL file
Uant_001-62.2370-58.65822015-12-18Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264579Uant_001.zip
Uant_002-62.2370-58.65822015-12-18Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264579Uant_002.zip
Uant_004-62.2370-58.65822015-12-18Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264579Uant_004.zip
Uant_009-62.2370-58.65822015-12-18Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264579Uant_009.zip
Uant_010-62.2370-58.65822015-12-18Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264579Uant_010.zip
Uant_020-62.2370-58.65822015-12-18Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264579Uant_020.zip
Uant_022-62.2394-58.65342015-12-27Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264580Uant_022.zip
Uant_033-62.2394-58.65342015-12-27Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264580Uant_033.zip
Uant_037-62.2394-58.65342015-12-27Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264580Uant_037.zip
Uant_038-62.2394-58.65342015-12-27Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264580Uant_038.zip
Uant_043-62.2529-58.64952015-12-22Usnea antarticaAntarcticaKing George IslandLagostina E.FR-0264581Uant_043.zip
Uant_384-61.2223-55.35972016-02-08Usnea antarticaAntarcticaElephant IslandAndreev M.FR-0264582Uant_384.zip
Uant_402-62.1903-58.92672016-04-08Usnea antarticaAntarcticaKing George IslandAndreev M.FR-0264583Uant_402.zip
Uant_407-62.1903-58.92672016-04-08Usnea antarticaAntarcticaKing George IslandAndreev M.FR-0264583Uant_407.zip
Uaur_064-62.2370-58.65822015-12-18Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264584Uaur_064.zip
Uaur_065-62.2370-58.65822015-12-18Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264584Uaur_065.zip
Uaur_067-62.2370-58.65822015-12-18Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264584Uaur_067.zip
Uaur_069-62.2370-58.65822015-12-18Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264584Uaur_069.zip
Uaur_070-62.2370-58.65822015-12-18Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264584Uaur_070.zip
Uaur_071-62.2370-58.65822015-12-18Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264584Uaur_071.zip
Uaur_072-62.2370-58.65822015-12-18Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264584Uaur_072.zip
Uaur_073-62.2370-58.65822015-12-18Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264584Uaur_073.zip
Uaur_091-62.2394-58.65342015-12-27Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264585Uaur_091.zip
Uaur_096-62.2394-58.65342015-12-27Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264585Uaur_096.zip
Uaur_101b-62.2394-58.65342015-12-27Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264585Uaur_101b.zip
Uaur_114-62.2529-58.64952015-12-22Usnea aurantiaco-atraAntarcticaKing George IslandLagostina E.FR-0264586Uaur_114.zip
Uaur_418-61.2165-55.35882016-02-04Usnea aurantaco-atraAntarcticaElephant IslandAndreev M.FR-0264587Uaur_418.zip
Uaur_419-61.2165-55.35882016-02-04Usnea aurantaco-atraAntarcticaElephant IslandAndreev M.FR-0264587Uaur_419.zip
Uaur_421-61.2165-55.35882016-02-04Usnea aurantaco-atraAntarcticaElephant IslandAndreev M.FR-0264587Uaur_421.zip
Uaur_433-61.2165-55.35882016-02-04Usnea aurantaco-atraAntarcticaElephant IslandAndreev M.FR-0264587Uaur_433.zip
Uaur_440-62.2029-58.99282016-04-08Usnea aurantaco-atraAntarcticaKing George IslandAndreev M.FR-0264589Uaur_440.zip
Uaur_449-62.2029-58.99282016-04-08Usnea aurantaco-atraAntarcticaKing George IslandAndreev M.FR-0264589Uaur_449.zip
Uaur_450-62.2029-58.99282016-04-08Usnea aurantaco-atraAntarcticaKing George IslandAndreev M.FR-0264589Uaur_450.zip