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Cao, Ruiwen; Wang, Qing; Yang, Dinglong; Liu, Yongliang; Ran, Wen; Qu, Yi; Wu, Huifeng; Cong, Ming; Li, Fei; Ji, Chenglong; Zhao, Jianmin (2018): Seawater carbonate chemistry and immune function of the Pacific oyster against Vibrio splendidus challenge [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.889437, Supplement to: Cao, R et al. (2018): CO 2 -induced ocean acidification impairs the immune function of the Pacific oyster against Vibrio splendidus challenge: An integrated study from a cellular and proteomic perspective. Science of the Total Environment, 625, 1574-1583, https://doi.org/10.1016/j.scitotenv.2018.01.056

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Abstract:
Ocean acidification (OA) and pathogenic diseases pose a considerable threat to key species of marine ecosystem. However, few studies have investigated the combined impact of reduced seawater pH and pathogen challenge on the immune responses of marine invertebrates. In this study, Pacific oysters, Crassostrea gigas, were exposed to OA (~2000 ppm) for 28 days and then challenged with Vibrio splendidus for another 72 h. Hemocyte parameters showed that V. splendidus infection exacerbated the impaired oyster immune responses under OA exposure. An iTRAQ-based quantitative proteomic analysis revealed that C. gigas responded differently to OA stress and V. splendidus challenge, alone or in combination. Generally, OA appears to act via a generalized stress response by causing oxidative stress, which could lead to cellular injury and cause disruption to the cytoskeleton, protein turnover, immune responses and energy metabolism. V. splendidus challenge in oysters could suppress the immune system directly and lead to a disturbed cytoskeleton structure, increased protein turnover and energy metabolism suppression, without causing oxidative stress. The combined OA- and V. splendidus-treated oysters ultimately presented a similar, but stronger proteomic response pattern compared with OA treatment alone. Overall, the impaired oyster immune functions caused by OA exposure may have increased the risk of V. splendidus infection. These results have important implications for the impact of OA on disease outbreaks in marine invertebrates, which would have significant economic and ecological repercussions.
Keyword(s):
Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea gigas; Immunology/Self-protection; Laboratory experiment; Mollusca; North Pacific; Other; Single species; Temperate
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-02.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeZhao, Jianminstudy
2SpeciesSpeciesZhao, Jianmin
3Registration number of speciesReg spec noZhao, Jianmin
4Uniform resource locator/link to referenceURL refZhao, JianminWoRMS Aphia ID
5Experiment durationExp durationdaysZhao, Jianmin
6Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetppmvZhao, Jianmintreatment
7TreatmentTreatZhao, Jianmin
8Phagocytosis ratePhagocytosis rate%Zhao, Jianmin
9Phagocytosis rate, standard deviationPhago std dev±Zhao, Jianmin
10Reactive oxygen species productionROS prodZhao, Jianmin
11Reactive oxygen species production, standard deviationROS prod std dev±Zhao, Jianmin
12PercentagePerc%Zhao, Jianmindead hemocytes
13Percentage, standard deviationPerc std dev±Zhao, Jianmindead hemocytes
14Hemocyte countHemocyte#Zhao, Jianmin
15Hemocyte count, standard deviationHemocyte std dev±Zhao, Jianmin
16Number of expressed proteinsExpress prot#Zhao, Jianminup-regulated
17Number of expressed proteinsExpress prot#Zhao, Jianmindown-regulated
18NameNameZhao, Jianmin
19GroupGroupZhao, Jianmin
20Fold changeFold changeZhao, JianminLog2 Fold change
21Gene expressionGene expressionZhao, Jianmin
22Gene expression, standard deviationGene expression std dev±Zhao, Jianmin
23Temperature, waterTemp°CZhao, Jianmin
24Temperature, water, standard deviationTemp std dev±Zhao, Jianmin
25SalinitySalZhao, Jianmin
26Salinity, standard deviationSal std dev±Zhao, Jianmin
27pHpHZhao, JianminPotentiometricNBS scale
28pH, standard deviationpH std dev±Zhao, JianminPotentiometricNBS scale
29Alkalinity, totalATµmol/kgZhao, JianminPotentiometric titration
30Alkalinity, total, standard deviationAT std dev±Zhao, JianminPotentiometric titration
31Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmZhao, JianminCalculated using CO2SYS
32Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Zhao, JianminCalculated using CO2SYS
33Carbon, inorganic, dissolvedDICµmol/kgZhao, JianminCalculated using CO2SYS
34Carbon, inorganic, dissolved, standard deviationDIC std dev±Zhao, JianminCalculated using CO2SYS
35Calcite saturation stateOmega CalZhao, JianminCalculated using CO2SYS
36Calcite saturation state, standard deviationOmega Cal std dev±Zhao, JianminCalculated using CO2SYS
37Aragonite saturation stateOmega ArgZhao, JianminCalculated using CO2SYS
38Aragonite saturation state, standard deviationOmega Arg std dev±Zhao, JianminCalculated using CO2SYS
39Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
41Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1458 data points

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