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Cao, Ruiwen; Wang, Qing; Yang, Dinglong; Liu, Yongliang; Ran, Wen; Qu, Yi; Wu, Huifeng; Cong, Ming; Li, Fei; Ji, Chenglong; Zhao, Jianmin (2018): Seawater carbonate chemistry and immune function of the Pacific oyster against Vibrio splendidus challenge [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.889437, Supplement to: Cao, R et al. (2018): CO 2 -induced ocean acidification impairs the immune function of the Pacific oyster against Vibrio splendidus challenge: An integrated study from a cellular and proteomic perspective. Science of the Total Environment, 625, 1574-1583, https://doi.org/10.1016/j.scitotenv.2018.01.056

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Abstract:
Ocean acidification (OA) and pathogenic diseases pose a considerable threat to key species of marine ecosystem. However, few studies have investigated the combined impact of reduced seawater pH and pathogen challenge on the immune responses of marine invertebrates. In this study, Pacific oysters, Crassostrea gigas, were exposed to OA (~2000 ppm) for 28 days and then challenged with Vibrio splendidus for another 72 h. Hemocyte parameters showed that V. splendidus infection exacerbated the impaired oyster immune responses under OA exposure. An iTRAQ-based quantitative proteomic analysis revealed that C. gigas responded differently to OA stress and V. splendidus challenge, alone or in combination. Generally, OA appears to act via a generalized stress response by causing oxidative stress, which could lead to cellular injury and cause disruption to the cytoskeleton, protein turnover, immune responses and energy metabolism. V. splendidus challenge in oysters could suppress the immune system directly and lead to a disturbed cytoskeleton structure, increased protein turnover and energy metabolism suppression, without causing oxidative stress. The combined OA- and V. splendidus-treated oysters ultimately presented a similar, but stronger proteomic response pattern compared with OA treatment alone. Overall, the impaired oyster immune functions caused by OA exposure may have increased the risk of V. splendidus infection. These results have important implications for the impact of OA on disease outbreaks in marine invertebrates, which would have significant economic and ecological repercussions.
Keyword(s):
Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea gigas; Immunology/Self-protection; Laboratory experiment; Mollusca; North Pacific; Other; Single species; Temperate
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-02.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeZhao, Jianminstudy
SpeciesSpeciesZhao, Jianmin
Registration number of speciesReg spec noZhao, Jianmin
Uniform resource locator/link to referenceURL refZhao, JianminWoRMS Aphia ID
Experiment durationExp durationdaysZhao, Jianmin
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetppmvZhao, Jianmintreatment
TreatmentTreatZhao, Jianmin
Phagocytosis ratePhagocytosis rate%Zhao, Jianmin
Phagocytosis rate, standard deviationPhago std dev±Zhao, Jianmin
10 Reactive oxygen species productionROS prodZhao, Jianmin
11 Reactive oxygen species production, standard deviationROS prod std dev±Zhao, Jianmin
12 PercentagePerc%Zhao, Jianmindead hemocytes
13 Percentage, standard deviationPerc std dev±Zhao, Jianmindead hemocytes
14 Hemocyte countHemocyte#Zhao, Jianmin
15 Hemocyte count, standard deviationHemocyte std dev±Zhao, Jianmin
16 Number of expressed proteinsExpress prot#Zhao, Jianminup-regulated
17 Number of expressed proteinsExpress prot#Zhao, Jianmindown-regulated
18 NameNameZhao, Jianmin
19 GroupGroupZhao, Jianmin
20 Fold changeFold changeZhao, JianminLog2 Fold change
21 Gene expressionGene expressionZhao, Jianmin
22 Gene expression, standard deviationGene expression std dev±Zhao, Jianmin
23 Temperature, waterTemp°CZhao, Jianmin
24 Temperature, water, standard deviationTemp std dev±Zhao, Jianmin
25 SalinitySalZhao, Jianmin
26 Salinity, standard deviationSal std dev±Zhao, Jianmin
27 pHpHZhao, JianminPotentiometricNBS scale
28 pH, standard deviationpH std dev±Zhao, JianminPotentiometricNBS scale
29 Alkalinity, totalATµmol/kgZhao, JianminPotentiometric titration
30 Alkalinity, total, standard deviationAT std dev±Zhao, JianminPotentiometric titration
31 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmZhao, JianminCalculated using CO2SYS
32 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Zhao, JianminCalculated using CO2SYS
33 Carbon, inorganic, dissolvedDICµmol/kgZhao, JianminCalculated using CO2SYS
34 Carbon, inorganic, dissolved, standard deviationDIC std dev±Zhao, JianminCalculated using CO2SYS
35 Calcite saturation stateOmega CalZhao, JianminCalculated using CO2SYS
36 Calcite saturation state, standard deviationOmega Cal std dev±Zhao, JianminCalculated using CO2SYS
37 Aragonite saturation stateOmega ArgZhao, JianminCalculated using CO2SYS
38 Aragonite saturation state, standard deviationOmega Arg std dev±Zhao, JianminCalculated using CO2SYS
39 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
41 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1458 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Exp duration [days]

pCO2water_SST_wet [ppmv]
(treatment)

Treat

Phagocytosis rate [%]

Phago std dev [±]
10 
ROS prod
11 
ROS prod std dev [±]
12 
Perc [%]
(dead hemocytes)
13 
Perc std dev [±]
(dead hemocytes)
14 
Hemocyte [#]
15 
Hemocyte std dev [±]
16 
Express prot [#]
(up-regulated)
17 
Express prot [#]
(down-regulated)
18 
Name
19 
Group
20 
Fold change
(Log2 Fold change)
21 
Gene expression
22 
Gene expression std dev [±]
23 
Temp [°C]
24 
Temp std dev [±]
25 
Sal
26 
Sal std dev [±]
27 
pH
(NBS scale, Potentiometric)
28 
pH std dev [±]
(NBS scale, Potentiometric)
29 
AT [µmol/kg]
(Potentiometric titration)
30 
AT std dev [±]
(Potentiometric titration)
31 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
32 
pCO2 std dev [±]
(Calculated using CO2SYS)
33 
DIC [µmol/kg]
(Calculated using CO2SYS)
34 
DIC std dev [±]
(Calculated using CO2SYS)
35 
Omega Cal
(Calculated using CO2SYS)
36 
Omega Cal std dev [±]
(Calculated using CO2SYS)
37 
Omega Arg
(Calculated using CO2SYS)
38 
Omega Arg std dev [±]
(Calculated using CO2SYS)
39 
CSC flag
(Calculated using seacarb afte...)
40 
pH
(total scale, Calculated using...)
41 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
42 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
43 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
44 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
45 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
46 
DIC [µmol/kg]
(Calculated using seacarb afte...)
47 
Omega Arg
(Calculated using seacarb afte...)
48 
Omega Cal
(Calculated using seacarb afte...)
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400non-inj33.4802.5411.112.183.271.36111000320210313.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400fssw-inj31.3802.927.262.483.601.22124144039868813.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400vibrio-inj28.9005.805.881.407.961.81147597019250113.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000non-inj30.4405.7015.364.716.921.74102848916715012.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000fssw-inj27.3254.0914.692.437.521.31113452815276712.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000vibrio-inj18.9502.9910.743.6510.382.85141037718256412.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Vibrio4744
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA4444
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Vibrio-OA9489
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OAcalmodulingene0.999
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OAcalmodulinprotein0.490
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OAdefh2gene-3.344
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OAdefh2protein-2.519
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OAintegrin alpha-4gene0.653
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OAintegrin alpha-4protein0.654
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OACaspase-3gene3.013
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OACaspase-3protein0.192
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OAGSTgene1.078
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OAGSTprotein-1.147
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OASODgene1.618
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OASODprotein0.132
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Juncalmodulingene0.435
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Juncalmodulinprotein1.146
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Jundefh2gene-5.227
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Jundefh2protein-2.837
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Junintegrin alpha-4gene0.062
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28Junintegrin alpha-4protein0.884
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28JunCaspase-3gene-0.287
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28JunCaspase-3protein-0.148
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28JunGSTgene-0.649
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28JunGSTprotein-0.160
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28JunSODgene-0.969
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28JunSODprotein-0.654
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&juncalmodulingene0.614
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&juncalmodulinprotein-0.031
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&jundefh2gene-7.039
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&jundefh2protein-3.019
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&junintegrin alpha-4gene0.281
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&junintegrin alpha-4protein1.091
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&junCaspase-3gene1.961
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&junCaspase-3protein-1.120
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&junGSTgene1.261
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&junGSTprotein-2.408
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&junSODgene0.264
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28OA&junSODprotein1.063
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400fssw-injcalmudulin1.0250.277213.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000fssw-injcalmudulin2.0270.976012.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400fssw-injcasp 31.1030.637613.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000fssw-injcasp 310.8072.451112.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400fssw-injDefensin1.1630.311613.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000fssw-injDefensin0.1470.098612.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400fssw-injGST1.1390.668613.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000fssw-injGST2.4050.488612.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400fssw-injintegrin1.1850.303613.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000fssw-injintegrin1.4920.888912.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400fssw-injSOD1.1030.637613.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000fssw-injSOD4.1762.327812.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400vibrio-injcalmudulin1.4180.662713.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000vibrio-injcalmudulin1.5520.562012.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400vibrio-injcasp 30.9040.612613.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000vibrio-injcasp 37.2053.214412.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400vibrio-injDefensin0.0400.008813.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000vibrio-injDefensin0.0110.009712.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400vibrio-injGST0.5330.310013.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000vibrio-injGST2.7300.159212.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400vibrio-injintegrin1.0780.411213.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000vibrio-injintegrin1.3200.424312.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org28400vibrio-injSOD0.2320.068313.20.531.20.58.110.022317.1345.18482.399.652155.7043.073.050.061.930.04267.9919.17473.89475.652010.06125.522154.751.943.06
laboratoryCrassostrea gigas (mollusk)140656marinespecies.org282000vibrio-injSOD1.5420.782712.70.731.20.57.570.052349.3955.191862.4144.082368.2856.060.970.020.610.01267.4575.271831.691838.542252.0239.842367.130.620.97