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Fink, Artur (2017): Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Magnetic Island sulfate reduction. PANGAEA, https://doi.org/10.1594/PANGAEA.873829, In supplement to: Fink, Artur; den Haan, Jost; Chennu, Arjun; Uthicke, Sven; de Beer, Dirk (2017): Ocean Acidification Changes Abiotic Processes but Not Biotic Processes in Coral Reef Sediments. Frontiers in Marine Science, 4, https://doi.org/10.3389/fmars.2017.00073

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Keyword(s):
Benthos; Bottles or small containers/Aquaria ( 20 L); Coast and continental shelf; Entire community; Laboratory experiment; Other metabolic rates; Soft-bottom community; Tropical
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloise; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethodComment
1Depth, nominalDepth, nominalFink, Artur
2TreatmentTreatFink, Artur
3Sulfate reduction rateSRRnmol/m2/dayFink, Artur
4pHpHFink, Arturtotal scale
5pH, standard errorpH std e±Fink, Arturtotal scale
6Alkalinity, totalATµmol/kgFink, Artur
7Standard errorStd e±Fink, Artur
8Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFink, Artur
9Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Fink, Artur
10Carbon, inorganic, dissolvedDICµmol/lFink, Artur
11Carbon, inorganic, dissolved, standard deviationDIC std dev±Fink, Artur
12Calcite saturation stateOmega CalFink, Artur
13Standard errorStd e±Fink, Artur
14Aragonite saturation stateOmega ArgFink, Artur
15Standard errorStd e±Fink, Artur
16High magnesium calcite saturation stateOmega HMCFink, Artur
17Standard errorStd e±Fink, Artur
18Temperature, waterTemp°CFink, Artur
19Standard errorStd e±Fink, Artur
20SalinitySalFink, Artur
21Standard errorStd e±Fink, Artur
22Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
24Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
26Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Size:
1080 data points

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