Citation:

fmars.2017.00073

Name: Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Magnetic Island sulfate reduction
Creator: Artur Fink
Published: 2017-03-22
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Entire community; Laboratory experiment; Other metabolic rates; Soft-bottom community; Tropical

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Keyword(s):

Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Entire community; Laboratory experiment; Other metabolic rates; Soft-bottom community; Tropical

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Project(s):

Biological Impacts of Ocean Acidification (BIOACID)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Depth, nominal	Depth nominal		Fink, Artur
2	Treatment	Treat		Fink, Artur
3	Sulfate reduction rate	SRR	nmol/m²/day	Fink, Artur
4	pH	pH		Fink, Artur		total scale
5	pH, standard error	pH std e	±	Fink, Artur		total scale
6	Alkalinity, total	AT	µmol/kg	Fink, Artur
7	Standard error	Std e	±	Fink, Artur
8	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Fink, Artur
9	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Fink, Artur
10	Carbon, inorganic, dissolved	DIC	µmol/l	Fink, Artur
11	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Fink, Artur
12	Calcite saturation state	Omega Cal		Fink, Artur
13	Standard error	Std e	±	Fink, Artur
14	Aragonite saturation state	Omega Arg		Fink, Artur
15	Standard error	Std e	±	Fink, Artur
16	High magnesium calcite saturation state	Omega HMC		Fink, Artur
17	Standard error	Std e	±	Fink, Artur
18	Temperature, water	Temp	°C	Fink, Artur
19	Standard error	Std e	±	Fink, Artur
20	Salinity	Sal		Fink, Artur
21	Standard error	Std e	±	Fink, Artur
22	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
23	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
24	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
25	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
26	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
27	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
28	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
29	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
30	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

1080 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Depth nominal	2 Treat	3 SRR [nmol/m²/day]	4 pH (total scale)	6 AT [µmol/kg]	7 Std e [±]	8 pCO2water_SST_wet [µatm]	9 pCO2 std dev [±]	10 DIC [µmol/l]	11 DIC std dev [±]	12 Omega Cal	14 Omega Arg	16 Omega HMC	18 Temp [°C]	20 Sal	22 CSC flag	23 CO2 [µmol/kg]	24 fCO2water_SST_wet [µatm]	25 pCO2water_SST_wet [µatm]	26 [HCO3]- [µmol/kg]	27 [CO3]2- [µmol/kg]	28 DIC [µmol/kg]	29 Omega Arg	30 Omega Cal
0-0.5	Control	3.26	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
0.5-1.5	Control	27.32	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
1.5-3.0	Control	30.85	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
3.0-5.0	Control	33.97	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
0-0.5	Control	0.23	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
0.5-1.5	Control	21.11	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
1.5-3.0	Control	19.80	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
3.0-5.0	Control	13.91	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
0-0.5	Control	0.98	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
0.5-1.5	Control	10.53	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
1.5-3.0	Control	24.74	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
3.0-5.0	Control	12.20	8.00	2317	1	457	4	2031	2	5.01	3.32	1.12	27.3	34	8	12.28	455.62	457	1809.28	207.95	2029.51	3.36	5.07
0-0.5	Medium	6.18	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
0.5-1.5	Medium	35.62	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
1.5-3.0	Medium	28.49	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
3.0-5.0	Medium	19.81	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
0-0.5	Medium	4.20	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
0.5-1.5	Medium	23.52	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
1.5-3.0	Medium	72.42	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
3.0-5.0	Medium	29.35	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
0-0.5	Medium	9.26	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
0.5-1.5	Medium	11.44	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
1.5-3.0	Medium	21.27	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
3.0-5.0	Medium	30.88	7.88	2318	1	628	0	2095	1	4.04	2.68	0.91	27.2	34	8	17.15	634.63	637	1912.80	166.17	2096.12	2.68	4.05
0-0.5	High	4.06	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
0.5-1.5	High	12.64	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
1.5-3.0	High	41.70	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
3.0-5.0	High	17.36	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
0-0.5	High	19.88	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
0.5-1.5	High	24.30	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
1.5-3.0	High	19.85	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
3.0-5.0	High	15.51	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
0-0.5	High	23.61	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
0.5-1.5	High	29.71	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
1.5-3.0	High	22.77	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20
3.0-5.0	High	7.10	7.76	2317	0	835	0	2144	0	3.28	2.17	0.74	27.1	34	8	23.65	873.12	876	1997.45	131.15	2152.25	2.12	3.20