Citation:

PANGAEA.869572

Name: An in situ assessment of local adaptation in a calcifying polychaete froma shallow CO2 vent system
Published: 2016-12-19
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Animalia; Annelida; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); CO2 vent; Coast and continental shelf; Field experiment; Growth/Morphology; Laboratory experiment; Mediterranean Sea; Mortality/Survival; Reproduction; Simplaria sp.; Single species; Temperate

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Keyword(s):

Animalia; Annelida; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); CO2 vent; Coast and continental shelf; Field experiment; Growth/Morphology; Laboratory experiment; Mediterranean Sea; Mortality/Survival; Reproduction; Simplaria sp.; Single species; Temperate

Related to:

Lucey, Noelle M; Lombardi, Chiara; Florio, Maurizio; DeMarchi, Lucia; Nannini, Matteo; Rundle, Simon; Gambi, Maria Cristina; Calosi, Piero (2016): An in situ assessment of local adaptation in a calcifying polychaete from a shallow CO2 vent system. Evolutionary Applications, 9(9), 1054-1071, https://doi.org/10.1111/eva.12400

Original version:

Lucey, Noelle M; Lombardi, Chiara; Florio, Maurizio; DeMarchi, Lucia; Nannini, Matteo; Rundle, Simon; Gambi, Maria Cristina; Calosi, Piero (2016): Fitness traits of a calcifying polychaete assessed after the reciprocal transplant experiment at a low-pH shallow CO2 vent system (June-July 2015). PANGAEA, https://doi.org/10.1594/PANGAEA.861354

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 40.730600 * Longitude: 13.963400

Date/Time Start: 2015-06-17T00:00:00 * Date/Time End: 2015-07-06T00:00:00

Minimum Elevation: -2.0 m * Maximum Elevation: -2.0 m

Event(s):

Ischia/S2_2015 * Latitude: 40.730600 * Longitude: 13.963400 * Date/Time Start: 2015-06-17T00:00:00 * Date/Time End: 2015-07-06T00:00:00 * Elevation: -2.0 m * Location: Mediterranean Sea

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-12-16.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Species	Species		Lucey, Noelle M
2	Type	Type		Lucey, Noelle M		study
3	Treatment	Treat		Lucey, Noelle M		A = acidified, C = control; habitat origin and reciprical transplant location
4	Replicate	Repl		Lucey, Noelle M		deployed trap
5	Treatment	Treat		Lucey, Noelle M		the pH habitat that the experimental individual was collected from
6	Treatment	Treat		Lucey, Noelle M		the pH habitat that the experimental individual was transplanted into
7	Surface area	SA	cm²	Lucey, Noelle M		the tube size of the recruits used in the experiment measured at the beginning of the transplant experiment
8	Status	Status		Lucey, Noelle M		1 indicates the individual survived during the experiment, 0 indicates mortality was observed
9	Status	Status		Lucey, Noelle M		1 indicates the individual did reach maturation during the experiment, 0 indicates that the individual did not
10	Surface area	SA	cm²	Lucey, Noelle M		total surface area of the individual at the end of the transplant period
11	Surface area	SA	cm²	Lucey, Noelle M		difference in tube growth between the beginning and end of the transplant
12	Dissolution rate	Diss rate	%	Lucey, Noelle M		percent of the total tube surface area that dissolved
13	Number	n	#	Lucey, Noelle M		F3 generation recruits, settled in the trap, from the initial F2 individual
14	Surface area	SA	cm²	Lucey, Noelle M		average size of the tube area for all the F3 recruits from each F2 parent individual
15	Individuals	Ind	#	Lucey, Noelle M		at the end of the reciprocal transplant experiment, including all living initial F2-generation recruits, all living F3 recruits, and any eggs or embryos from each starting F2-generation individual
16	Replicate	Repl		Lucey, Noelle M		stake
17	Identification	ID		Lucey, Noelle M		the slide number and where/what conditions the individuals were reared on, as followed from wild-caught parents during the entire grow-out period
18	pH	pH		Lucey, Noelle M	Potentiometric	habitat origin, NBS scale
19	pH, standard deviation	pH std dev	±	Lucey, Noelle M	Potentiometric	habitat origin, NBS scale
20	Temperature, water	Temp	°C	Lucey, Noelle M		habitat origin
21	Temperature, water, standard deviation	Temp std dev	±	Lucey, Noelle M		habitat origin
22	Salinity	Sal		Lucey, Noelle M		habitat origin
23	Salinity, standard deviation	Sal std dev	±	Lucey, Noelle M		habitat origin
24	Alkalinity, total	AT	µmol/kg	Lucey, Noelle M	Potentiometric titration	habitat origin
25	Alkalinity, total, standard deviation	AT std dev	±	Lucey, Noelle M	Potentiometric titration	habitat origin
26	Carbon dioxide	CO2	µmol/kg	Lucey, Noelle M	Calculated using seacarb	habitat origin
27	Carbon dioxide, standard deviation	CO2 std dev	±	Lucey, Noelle M	Calculated using seacarb	habitat origin
28	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Lucey, Noelle M	Calculated using seacarb	habitat origin
29	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Lucey, Noelle M	Calculated using seacarb	habitat origin
30	Bicarbonate ion	[HCO3]-	µmol/kg	Lucey, Noelle M	Calculated using seacarb	habitat origin
31	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Lucey, Noelle M	Calculated using seacarb	habitat origin
32	Carbonate ion	[CO3]2-	µmol/kg	Lucey, Noelle M	Calculated using seacarb	habitat origin
33	Carbonate ion, standard deviation	[CO3]2- std dev	±	Lucey, Noelle M	Calculated using seacarb	habitat origin
34	Carbon, inorganic, dissolved	DIC	µmol/kg	Lucey, Noelle M	Calculated using seacarb	habitat origin
35	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Lucey, Noelle M	Calculated using seacarb	habitat origin
36	Calcite saturation state	Omega Cal		Lucey, Noelle M	Calculated using seacarb	habitat origin
37	Calcite saturation state, standard deviation	Omega Cal std dev	±	Lucey, Noelle M	Calculated using seacarb	habitat origin
38	Aragonite saturation state	Omega Arg		Lucey, Noelle M	Calculated using seacarb	habitat origin
39	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Lucey, Noelle M	Calculated using seacarb	habitat origin
40	pH	pH		Lucey, Noelle M	Potentiometric	reciprical transplant location, NBS scale
41	pH, standard deviation	pH std dev	±	Lucey, Noelle M	Potentiometric	reciprical transplant location, NBS scale
42	Temperature, water	Temp	°C	Lucey, Noelle M		reciprical transplant location
43	Temperature, water, standard deviation	Temp std dev	±	Lucey, Noelle M		reciprical transplant location
44	Salinity	Sal		Lucey, Noelle M		reciprical transplant location
45	Salinity, standard deviation	Sal std dev	±	Lucey, Noelle M		reciprical transplant location
46	Alkalinity, total	AT	µmol/kg	Lucey, Noelle M	Potentiometric titration	reciprical transplant location
47	Alkalinity, total, standard deviation	AT std dev	±	Lucey, Noelle M	Potentiometric titration	reciprical transplant location
48	Carbon dioxide	CO2	µmol/kg	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
49	Carbon dioxide, standard deviation	CO2 std dev	±	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
50	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
51	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
52	Bicarbonate ion	[HCO3]-	µmol/kg	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
53	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
54	Carbonate ion	[CO3]2-	µmol/kg	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
55	Carbonate ion, standard deviation	[CO3]2- std dev	±	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
56	Carbon, inorganic, dissolved	DIC	µmol/kg	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
57	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
58	Calcite saturation state	Omega Cal		Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
59	Calcite saturation state, standard deviation	Omega Cal std dev	±	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
60	Aragonite saturation state	Omega Arg		Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
61	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Lucey, Noelle M	Calculated using seacarb	reciprical transplant location
62	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
63	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	habitat origin, total scale
64	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	habitat origin
65	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	habitat origin
66	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	habitat origin
67	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	habitat origin
68	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	habitat origin
69	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	habitat origin
70	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	habitat origin
71	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	habitat origin
72	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	reciprical transplant location, total scale
73	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	reciprical transplant location
74	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	reciprical transplant location
75	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	reciprical transplant location
76	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	reciprical transplant location
77	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	reciprical transplant location
78	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	reciprical transplant location
79	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	reciprical transplant location
80	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	reciprical transplant location

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

6746 data points

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