Citation:

PANGAEA.859953

Name: Environmental context of all samples from the Tara Oceans Expedition (2009-2013), about depth specific features
Published: 2015-10-08
License: https://creativecommons.org/licenses/by/3.0/

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Published: 2015-10-08 • DOI registered: 2016-01-08

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Abstract:

The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides environmental context to all samples from the Tara Oceans Expedition (2009-2013), including calculated averages of mesaurements made concurrently at the sampling location and depth, and calculated averages from climatologies (AMODIS, VGPM) and satellite products.

Related to:

Pesant, Stephane; Tara Oceans Consortium, Coordinators; et al. (in prep.): Methodological and environmental context of Tara Oceans samples. Scientific Data

Other version:

Guidi, Lionel; Picheral, Marc; Pesant, Stephane; Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2017): Environmental context of all samples from the Tara Oceans Expedition (2009-2013), about sensor data in the targeted environmental feature [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.875576

Project(s):

Fondation Tara Expeditions (FondTara)

Tara Oceans Expedition (Tara_Oceans_2009-2013)

Coverage:

Median Latitude: 13.998831 * Median Longitude: -38.196532 * South-bound Latitude: -64.382200 * West-bound Longitude: -168.903100 * North-bound Latitude: 79.677700 * East-bound Longitude: 174.991700

Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T09:30:00

Event(s):

TARA_2009-2013_EVENT_unknown * Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T00:00:00 * Comment: This event is used to describe a few samples for which the sampling event is unknown

TARA_20090907T1530Z_001_EVENT_NET ([day] [water layer with no specific feature]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T15:30:00 * Campaign: (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net, type=Bongo, mesh(µm)=300, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-300])

TARA_20090907T1610Z_001_EVENT_NET ([day] [surface water layer (ENVO:00002042)]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T16:10:00 * Campaign: (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5 ([NET-DOUBLE-20]+[SIEVE-180])

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Sample ID	Sample ID		Pesant, Stephane		TARA_barcode#
2	Basis of campaign	Basis		Pesant, Stephane
3	Campaign of event	Campaign		Pesant, Stephane
4	Station label	Station		Pesant, Stephane		TARA_station#
5	Event label	Event		Pesant, Stephane
6	Optional event label	Event 2		Pesant, Stephane
7	Method/Device of event	Method/Device		Pesant, Stephane
8	Date/Time of event	Date/Time		Pesant, Stephane
9	Latitude of event	Latitude		Pesant, Stephane
10	Longitude of event	Longitude		Pesant, Stephane
11	Date/Time of event 2	Date/Time 2		Pesant, Stephane
12	Latitude of event 2	Latitude 2		Pesant, Stephane
13	Longitude of event 2	Longitude 2		Pesant, Stephane
14	Environmental feature	Env feature		Pesant, Stephane		abbreviation
15	Environmental feature	Env feature		Pesant, Stephane	Terms registered at EnvO, the Environmental Ontology	full name (ENVO:ID)
16	Marine biome	MP biome		Pesant, Stephane	Longhurst (2007)
17	Ocean and sea region	OS region		Pesant, Stephane	IHO General Sea Areas (1953) registered at www.marineregions.org	[abbreviation] full name (MRGID:ID)
18	Biogeographical province	BG province		Pesant, Stephane	Longhurst (2007) registered at marineregions.org	[abbreviation] full name (MRGID:ID)
19	Depth, reference	Depth ref	m	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
20	Conductivity	Cond	mS/cm	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
21	Salinity	Sal		Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
22	Temperature, water, potential	Tpot	°C	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
23	Density, sigma-theta (0)	Sigma-theta	kg/m³	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
24	Oxygen	O2	µmol/kg	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
25	Oxygen	O2	µmol/kg	Guidi, Lionel	calculated from in situ sensor data, calibrated using WOA09 climatology	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
26	Nitrate	[NO3]-	µmol/l	Guidi, Lionel	calculated from in situ sensor data, calibrated using water samples	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
27	Nitrite	[NO2]-	µmol/l	Guidi, Lionel	calculated from measurements on available water samples	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836319)
28	Phosphate	[PO4]3-	µmol/l	Guidi, Lionel	calculated from measurements on available water samples	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836319)
29	Nitrate and Nitrite	[NO3]- + [NO2]-	µmol/l	Guidi, Lionel	calculated from measurements on available water samples	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836319)
30	Silicate	Si(OH)4	µmol/l	Guidi, Lionel	calculated from measurements on available water samples	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836319)
31	Chlorophyll a	Chl a	mg/m³	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
32	Chlorophyll a	Chl a	mg/m³	Guidi, Lionel	calculated from in situ sensor data, calibrated using water samples	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
33	Angular scattering coefficient, 470 nm	beta470	m/sr	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321), includes backscattering by particulate and dissolved matter and water molecules
34	Angular scattering coefficient, 470 nm	beta470	m/sr	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
35	Angular scattering coefficient, 470 nm	beta470	m/sr	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321), in situ dark
36	Optical backscattering coefficient, 470 nm	bb470	1/m	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321), includes backscattering by particulate and dissolved matter and water molecules
37	Backscattering coefficient of particles, 470 nm	bbp470	1/m	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
38	Fluorescence, colored dissolved organic matter	fCDOM	ppb (QSE)	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321), expressed in ppb QSE (i.e. fluorescence emitted by 1 ppb of quinine sulfate diluted in 0.05 M sulfuric acid)
39	Optical beam attenuation coefficient, 660 nm	bac660	1/m	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321), includes attenuation by particulate and dissolved matter and water molecules
40	Beam attenuation coefficient of particles	bacp	1/m	Guidi, Lionel	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321), corrected for temperature drift of the sensor, using c(660) values at depth (assumed to be close to the attenuation coefficient of pure seawater)
41	Fluorescence, colored dissolved organic matter	fCDOM	ppb (QSE)	Chaffron, Samuel	calculated from AMODIS products	at the sampling location, expressed in ppb QSE (i.e. fluorescence emitted by 1 ppb of quinine sulfate diluted in 0.05 M sulfuric acid)
42	Radiation, photosynthetically active	PAR	mol quanta/m²/day	Chaffron, Samuel	calculated from AMODIS products	for a period of 8 days around sampling date and at the sampling location
43	Radiation, photosynthetically active	PAR	mol quanta/m²/day	Chaffron, Samuel	calculated from AMODIS products	for a period of 30 days around sampling date and at the sampling location
44	Net primary production of carbon	NPP C	mg/m²/day	Chaffron, Samuel	calculated from VGPM products	for a period of 8 days around sampling date and at the sampling location
45	Net primary production of carbon	NPP C	mg/m²/day	Chaffron, Samuel	calculated from VGPM products	for a period of 30 days around sampling date and at the sampling location
46	Mixed layer depth	MLD	m	Speich, Sabrina	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321), based on sigma theta
47	Mixed layer depth	MLD	m	Speich, Sabrina	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321), based on temperature
48	Depth of chlorophyll maximum	D chl m	m	Speich, Sabrina	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321), based on fluorescence
49	Depth of maximum Brunt Väisälä frequency	Depth max Brunt Väisälä freq	m	Speich, Sabrina	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
50	Depth of maximum oxygen concentration	Depth max O2	m	Speich, Sabrina	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
51	Depth of minimum oxygen concentration	Depth min O2	m	Speich, Sabrina	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
52	Depth of nitracline	Depth nitracline	m	Speich, Sabrina	calculated from in situ sensor data, calibrated using factory settings	in the selected environmental feature (source data: http://doi.pangaea.de/10.1594/PANGAEA.836321)
53	Season	Season		Speich, Sabrina		spring, summer, autumn, or winter
54	Season	Season		Speich, Sabrina		early, middle, or late
55	Moon phase, proportion	Moon phase proportion		Audic, Stephane		indicates if the phase of the moon is ascending (1) or descending (-1)
56	Moon phase, proportion	Moon phase proportion		Audic, Stephane		indicates the proportion of illuminated/total moon flat area visible from Earth
57	Sunshine duration	SSD	min	Audic, Stephane		day length
58	Geostrophic velocity, longitudinal	u	cm/s	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)
59	Geostrophic velocity, latitudinal	v	cm/s	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)
60	Okubo-Weiss parameter	OW		d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	indicates the presence of an eddy. Values<1 indicate "inside an eddy"; Values>1 indicate "outside an eddy"
61	Maximum Lyapunov exponent	MLE	1/day	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	indicates the presence of a transport front. Values>0.1 are characteristic of fronts
62	Sea surface temperature gradient, horizontal	SST grad h	°C/100 km	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)
63	Residence time	RT	days	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	of the water mass. Values>30 indicate "old water mass"; Values<30 indicate "young water mass"

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

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1086502 data points

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