Citation:

PANGAEA.837325

Name: Elevated carbon dioxide alters the plasma composition and behaviour of a shark
Published: 2014-10-27
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Animalia; Behaviour; Benthos; Biomass/Abundance/Elemental composition; Chordata; Coast and continental shelf; Growth/Morphology; Laboratory experiment; Mesocosm or benthocosm; Nekton; Not applicable; Respiration; Scyliorhinus canicula; Single species; Temperate

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Published: 2014-10-27 • DOI registered: 2014-11-27

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Keyword(s):

Animalia; Behaviour; Benthos; Biomass/Abundance/Elemental composition; Chordata; Coast and continental shelf; Growth/Morphology; Laboratory experiment; Mesocosm or benthocosm; Nekton; Not applicable; Respiration; Scyliorhinus canicula; Single species; Temperate

Related to:

Green, Leon; Jutfelt, Fredrik (2014): Elevated carbon dioxide alters the plasma composition and behaviour of a shark. Biology Letters, 10(9), 20140538-20140538, https://doi.org/10.1098/rsbl.2014.0538

Original version:

Green, Leon; Jutfelt, Fredrik (2014): Data from: Elevated carbon dioxide alters the plasma composition and behaviour of a shark [dataset]. Dryad Digital Repository, https://doi.org/10.5061/DRYAD.6S713

Further details:

Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0 [webpage]. https://cran.r-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-10-25.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Species	Species		Jutfelt, Fredrik
2	Treatment	Treat		Jutfelt, Fredrik
3	Haemoglobin	Haemoglobin	g/l	Jutfelt, Fredrik
4	Haematocrit	Ht	%	Jutfelt, Fredrik
5	Mean corpuscular haemoglobin concentration	MCHC	g/l	Jutfelt, Fredrik
6	pH	pH		Jutfelt, Fredrik		blood
7	Bicarbonate	[HCO3]-	mmol/l	Jutfelt, Fredrik		blood
8	Carbon dioxide, dissolved	CO2 diss	g/l	Jutfelt, Fredrik		blood
9	Potassium ion	K+	mmol/l	Jutfelt, Fredrik		blood
10	Sodium ion	Na+	mmol/l	Jutfelt, Fredrik		blood
11	Calcium ion	Ca2+	mmol/l	Jutfelt, Fredrik		blood
12	Chloride ion	Cl-	mmol/l	Jutfelt, Fredrik		blood
13	Mass	Mass	g	Jutfelt, Fredrik		start
14	Length	l	mm	Jutfelt, Fredrik		start
15	Mass	Mass	g	Jutfelt, Fredrik		end
16	Length	l	mm	Jutfelt, Fredrik		end
17	Percentage	Perc	%	Jutfelt, Fredrik		gained weight
18	Percentage	Perc	%	Jutfelt, Fredrik		gained length
19	Condition index	CI		Jutfelt, Fredrik		Fultons, start
20	Condition index	CI		Jutfelt, Fredrik		Fultons, end
21	Condition index	CI		Jutfelt, Fredrik		Fultons, change
22	Metabolic rate of oxygen	MR O2	mg/kg/h	Jutfelt, Fredrik		min
23	Metabolic rate of oxygen	MR O2	mg/kg/h	Jutfelt, Fredrik		max
24	Aerobic scope of oxygen	Aerobic scope	mg/kg/h	Jutfelt, Fredrik
25	Factorial aerobic scope	Factorial aerobic scope		Jutfelt, Fredrik
26	Sex	Sex		Jutfelt, Fredrik
27	Length	l	µm	Jutfelt, Fredrik		denticle
28	Width	w	µm	Jutfelt, Fredrik		denticle
29	Individuals	Ind	#	Jutfelt, Fredrik		left Turns
30	Individuals	Ind	#	Jutfelt, Fredrik		right Turns
31	Lateralization	Lat		Jutfelt, Fredrik
32	Lateralization	Lat		Jutfelt, Fredrik		absolute
33	Time in hours	Time	h	Jutfelt, Fredrik
34	Time in seconds	Time	s	Jutfelt, Fredrik		at bottom
35	Time in seconds	Time	s	Jutfelt, Fredrik		at surface
36	Time in seconds	Time	s	Jutfelt, Fredrik		total swimming time
37	Number	No		Jutfelt, Fredrik		swimming bouts
38	Time in seconds	Time	s	Jutfelt, Fredrik		longest swim
39	Time in seconds	Time	s	Jutfelt, Fredrik		surface time of longest swim
40	Number	No		Jutfelt, Fredrik		swimming bouts reaching surface
41	Time	Time	%	Jutfelt, Fredrik		swimming time at bottom
42	Time	Time	%	Jutfelt, Fredrik		swimming time at surface
43	Time	Time	%	Jutfelt, Fredrik		hour spent swimming
44	Fraction	Fraction		Jutfelt, Fredrik		swims reaching the surface
45	Identification	ID		Jutfelt, Fredrik		tank
46	Time in seconds	Time	s	Jutfelt, Fredrik		average time per swim per hour
47	Light mode	L mode		Jutfelt, Fredrik
48	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Jutfelt, Fredrik
49	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Jutfelt, Fredrik
50	Alkalinity, total	AT	µmol/kg	Jutfelt, Fredrik
51	Alkalinity, total, standard deviation	AT std dev	±	Jutfelt, Fredrik
52	Salinity	Sal		Jutfelt, Fredrik
53	Salinity, standard deviation	Sal std dev	±	Jutfelt, Fredrik
54	Temperature, water	Temp	°C	Jutfelt, Fredrik
55	Temperature, water, standard deviation	Temp std dev	±	Jutfelt, Fredrik
56	pH, total scale	pHT		Jutfelt, Fredrik	Calculated using CO2calc	total scale
57	pH, standard deviation	pH std dev	±	Jutfelt, Fredrik	Calculated using CO2calc	total scale
58	Aragonite saturation state	Omega Arg		Jutfelt, Fredrik	Calculated using CO2calc
59	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Jutfelt, Fredrik	Calculated using CO2calc
60	Calcite saturation state	Omega Cal		Jutfelt, Fredrik	Calculated using CO2calc
61	Calcite saturation state, standard deviation	Omega Cal std dev	±	Jutfelt, Fredrik	Calculated using CO2calc
62	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
63	pH, total scale	pHT		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
64	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
65	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
66	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
67	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
68	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
69	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
70	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

17041 data points

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Dineshram, R; Thiyagarajan, V; Lane, AC et al. (2013): Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis. https://doi.org/10.1594/PANGAEA.831445
Bouyoucos, IA; Watson, S-A; Planes, S et al. (2020): Seawater carbonate chemistry and behaviour, physiological metrics in blacktip reef shark (Carcharhinus melanopterus). https://doi.org/10.1594/PANGAEA.929942

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