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Gazeau, Frédéric; Van Rijswijk, P; Pozzato, L; Middelburg, Jack J (2014): Impacts of ocean acidification on sediment processes in shallow waters of the arctic ocean [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.834243, Supplement to: Gazeau, F et al. (2014): Impacts of Ocean Acidification on Sediment Processes in Shallow Waters of the Arctic Ocean. PLoS ONE, 9(4), e94068, https://doi.org/10.1371/journal.pone.0094068

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Abstract:
Despite the important roles of shallow-water sediments in global biogeochemical cycling, the effects of ocean acidification on sedimentary processes have received relatively little attention. As high-latitude cold waters can absorb more CO2 and usually have a lower buffering capacity than warmer waters, acidification rates in these areas are faster than those in sub-tropical regions. The present study investigates the effects of ocean acidification on sediment composition, processes and sediment-water fluxes in an Arctic coastal system. Undisturbed sediment cores, exempt of large dwelling organisms, were collected, incubated for a period of 14 days, and subject to a gradient of pCO2 covering the range of values projected for the end of the century. On five occasions during the experimental period, the sediment cores were isolated for flux measurements (oxygen, alkalinity, dissolved inorganic carbon, ammonium, nitrate, nitrite, phosphate and silicate). At the end of the experimental period, denitrification rates were measured and sediment samples were taken at several depth intervals for solid-phase analyses. Most of the parameters and processes (i.e. mineralization, denitrification) investigated showed no relationship with the overlying seawater pH, suggesting that ocean acidification will have limited impacts on the microbial activity and associated sediment-water fluxes on Arctic shelves, in the absence of active bio-irrigating organisms. Only following a pH decrease of 1 pH unit, not foreseen in the coming 300 years, significant enhancements of calcium carbonate dissolution and anammox rates were observed. Longer-term experiments on different sediment types are still required to confirm the limited impact of ocean acidification on shallow Arctic sediment processes as observed in this study.
Keyword(s):
Arctic; Benthos; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Entire community; Laboratory experiment; Polar; Soft-bottom community
Original version:
Gazeau, Frédéric; von Rijswijk, P; Pozzato, L; Middelburg, Jack J (2010): EPOCA 2009 Svalbard benthic experiment: fluxes [dataset]. Netherlands Institute of Ecology, PANGAEA, https://doi.org/10.1594/PANGAEA.745038
Gazeau, Frédéric; von Rijswijk, P; Pozzato, L; Middelburg, Jack J (2010): EPOCA 2009 Svalbard benthic experiment: seawater carbonate chemistry and nutrients [dataset]. Netherlands Institute of Ecology, PANGAEA, https://doi.org/10.1594/PANGAEA.745049
Gazeau, Frédéric; von Rijswijk, P; Pozzato, L; Middelburg, Jack J (2010): EPOCA 2009 Svalbard benthic experiment: sediments [dataset]. Netherlands Institute of Ecology, PANGAEA, https://doi.org/10.1594/PANGAEA.745039
Further details:
Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0 [webpage]. https://cran.r-project.org/package=seacarb
Funding:
Seventh Framework Programme (FP7), grant/award no. 211384: European Project on Ocean Acidification
Coverage:
Date/Time Start: 2009-06-28T00:00:00 * Date/Time End: 2009-06-28T00:00:00
Minimum DEPTH, sediment/rock: 0.005 m * Maximum DEPTH, sediment/rock: 0.270 m
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-07-22.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1DATE/TIMEDate/TimeGeocode
2CoreCoreGazeau, Frédéric
3DEPTH, sediment/rockDepth sedmGeocode
4Size fraction 1.000-0.500 mm, 0.0-1.0 phi, coarse sand1-0.5 mm%Gazeau, Frédéric
5Percentile 10Perc10µmGazeau, Frédéric
6Percentile 90Perc90µmGazeau, Frédéric
7Median, grain sizeD50µmGazeau, Frédéric
8Median, grain sizeD50phiGazeau, Frédéric
9Peak areaPeak areacm2Gazeau, Frédéric
10DeviationDevphiGazeau, Frédéric
11Size fraction < 0.016 mm<16 µm%Gazeau, Frédéric
12Size fraction < 0.002 mm, clay<2 µm%Gazeau, Frédéric
13Size fraction < 0.032 mm<32 µm%Gazeau, Frédéric
14Size fraction < 0.004 mm, clay<4 µm%Gazeau, Frédéric
15Size fraction < 0.050 mm<50 µm%Gazeau, Frédéric
16Size fraction < 0.063 mm, mud, silt+clay<63 µm%Gazeau, Frédéric
17Size fraction < 0.008 mm, clay<8 µm%Gazeau, Frédéric
18Size fraction 0.250-0.125 mm, 2.0-3.0 phi, fine sand250-125 µm%Gazeau, Frédéric
19beta-Carotene, beta,beta-Carotene per unit sediment massbb-Car/sedµg/gGazeau, Frédéric
20Chlorophyll a per unit sediment massChl a/sedµg/gGazeau, Frédéric
21Chlorophyll a + pheophorbides per unit sediment massChl a+pheo/sedµg/gGazeau, Frédéric
22Chlorophyll b per unit sediment massChl b/sedµg/gGazeau, Frédéric
23Chlorophyll c per unit sediment massChl c/sedµg/gGazeau, Frédéric
24Diadinoxanthin per unit sediment massDdx/sedµg/gGazeau, Frédéric
25Diatoxanthin per unit sediment massDiato/sedµg/gGazeau, Frédéric
26Phaeophytin a per unit sediment massPhaeophytin a/sedµg/gGazeau, Frédéric
27Phaeophytin a + allomer and isomer per unit sediment massPhaeophytin a+/sedµg/gGazeau, Frédéric
28Phaeophorbide a per unit sediment massPhaeopho a/sedµg/gGazeau, Frédéric
29Fucoxanthin per unit sediment massFuco/sedµg/gGazeau, Frédéric
30Neoxanthin per unit sediment massNeo/sedµg/gGazeau, Frédéric
31Peridinin per unit sediment massPerid/sedµg/gGazeau, Frédéric
32Violaxanthin per unit sediment massViola/sedµg/gGazeau, Frédéric
33Zeaxanthin per unit sediment massZea/sedµg/gGazeau, Frédéric
34Nitrogen, totalTN%Gazeau, Frédéric
35δ13C, particulate organic carbonδ13C POC‰ PDBGazeau, Frédéric
36δ15N, particulate organic nitrogenδ15N PON‰ airGazeau, Frédéric
37δ13C, total particulate carbonδ13C TPC‰ PDBGazeau, Frédéric
38Carbon, organic, totalTOC%Gazeau, Frédéric
39Carbon, totalTC%Gazeau, Frédéric
40Date/time startDate/time startGazeau, Frédéric
41Date/time endDate/time endGazeau, Frédéric
42IdentificationIDGazeau, Frédéricincubation
43Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmGazeau, Frédérictarget
44Alkalinity, total, fluxAT fluxmmol(eq)/m2/dayGazeau, Frédéric
45Carbon, inorganic, dissolved, fluxDIC fluxmmol/m2/dayGazeau, Frédéric
46Oxygen, flux, sediment oxygen demandSODmmol/m2/dayGazeau, Frédéric
47Ammonium, flux[NH4]+ fluxmmol/m2/dayGazeau, Frédéric
48Nitrite, flux[NO2]- fluxµmol/m2/dayGazeau, Frédéric
49Nitrate, flux[NO3]- fluxµmol/m2/dayGazeau, Frédéric
50Nitrite and nitrate, fluxNO2+NO3 fluxµmol/m2/dayGazeau, Frédéric
51Nitrogen, inorganic, dissolved, fluxDIN fluxµmol/m2/dayGazeau, Frédéric
52Phosphate, flux[PO4]3- fluxµmol/m2/dayGazeau, Frédéric
53Silicon, particulate, fluxSi fluxmmol/m2/dayGazeau, Frédéric
54Depth water equivalentDepth w.e.mGazeau, Frédéric
55Sample volumeSamp vollGazeau, Frédéricwater on top of sediment
56SalinitySalGazeau, Frédéric
57OxygenO2µmol/lGazeau, Frédérict0
58OxygenO2µmol/lGazeau, Frédérictf
59Temperature, waterTemp°CGazeau, Frédérict0
60pHpHGazeau, FrédéricPotentiometrict0, total scale
61Alkalinity, totalATµmol/kgGazeau, FrédéricPotentiometric titrationt0
62Carbon dioxideCO2µmol/kgGazeau, FrédéricCalculated using seacarbt0
63Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmGazeau, FrédéricCalculated using seacarbt0
64Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmGazeau, FrédéricCalculated using seacarbt0
65Bicarbonate ion[HCO3]-µmol/kgGazeau, FrédéricCalculated using seacarbt0
66Carbonate ion[CO3]2-µmol/kgGazeau, FrédéricCalculated using seacarbt0
67Carbon, inorganic, dissolvedDICµmol/kgGazeau, FrédéricCalculated using seacarbt0
68Aragonite saturation stateOmega ArgGazeau, FrédéricCalculated using seacarbt0
69Calcite saturation stateOmega CalGazeau, FrédéricCalculated using seacarbt0
70Temperature, waterTemp°CGazeau, Frédérictf
71pHpHGazeau, FrédéricPotentiometrictf, total scale
72Alkalinity, totalATµmol/kgGazeau, FrédéricPotentiometric titrationtf
73Carbon dioxideCO2µmol/kgGazeau, FrédéricCalculated using seacarbtf
74Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmGazeau, FrédéricCalculated using seacarbtf
75Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmGazeau, FrédéricCalculated using seacarbtf
76Bicarbonate ion[HCO3]-µmol/kgGazeau, FrédéricCalculated using seacarbtf
77Carbonate ion[CO3]2-µmol/kgGazeau, FrédéricCalculated using seacarbtf
78Carbon, inorganic, dissolvedDICµmol/kgGazeau, FrédéricCalculated using seacarbtf
79Aragonite saturation stateOmega ArgGazeau, FrédéricCalculated using seacarbtf
80Calcite saturation stateOmega CalGazeau, FrédéricCalculated using seacarbtf
81Temperature, waterTemp°CGazeau, Frédéricwhile measuring total alkalinity
82Density, mass densityDensitykg/m3Gazeau, Frédéric
83Alkalinity, totalATmmol(eq)/lGazeau, Frédérict0
84Alkalinity, totalATmmol(eq)/lGazeau, Frédérictf
85Carbon, inorganic, dissolvedDICµmol/lGazeau, Frédérict0
86Carbon, inorganic, dissolvedDICµmol/lGazeau, Frédérictf
87Ammonium[NH4]+µmol/lGazeau, FrédéricSpectrophotometrict0
88Ammonium[NH4]+µmol/lGazeau, FrédéricSpectrophotometrictf
89Nitrite[NO2]-µmol/lGazeau, FrédéricSpectrophotometrict0
90Nitrite[NO2]-µmol/lGazeau, FrédéricSpectrophotometrictf
91Nitrate[NO3]-µmol/lGazeau, FrédéricSpectrophotometrict0
92Nitrate[NO3]-µmol/lGazeau, FrédéricSpectrophotometrictf
93Nitrate and Nitrite[NO3]- + [NO2]-µmol/lGazeau, FrédéricSpectrophotometrict0
94Nitrate and Nitrite[NO3]- + [NO2]-µmol/lGazeau, FrédéricSpectrophotometrictf
95Phosphate[PO4]3-µmol/lGazeau, FrédéricSpectrophotometrict0
96Phosphate[PO4]3-µmol/lGazeau, FrédéricSpectrophotometrictf
97SiliconSiµmol/lGazeau, FrédéricSpectrophotometrict0
98SiliconSiµmol/lGazeau, FrédéricSpectrophotometrictf
99Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
100Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)t0
101Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)t0
102Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)t0
103Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)t0
104Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)t0
105Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)t0
106Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)t0
107Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)t0
108Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)tf
109Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)tf
110Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)tf
111Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)tf
112Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)tf
113Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)tf
114Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)tf
115Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)tf
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
11348 data points

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