Citation:

PANGAEA.825017

Name: Seawater carbonate chemistry and physiological tipping point of sea urchin larvae in a laboratory experiment
Published: 2013-12-23
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Animalia; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Echinodermata; Growth/Morphology; Laboratory experiment; Mortality/Survival; North Atlantic; Pelagos; Respiration; Single species; Strongylocentrotus droebachiensis; Temperate; Zooplankton

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Keyword(s):

Animalia; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Echinodermata; Growth/Morphology; Laboratory experiment; Mortality/Survival; North Atlantic; Pelagos; Respiration; Single species; Strongylocentrotus droebachiensis; Temperate; Zooplankton

Related to:

Dorey, Narimane; Lançon, Pauline; Thorndyke, Mike; Dupont, Sam (2013): Assessing physiological tipping point of sea urchin larvae exposed to a broad range of pH. Global Change Biology, 19(11), 3355-3367, https://doi.org/10.1111/gcb.12276

Original version:

Dorey, Narimane; Lançon, Pauline; Thorndyke, Mike; Dupont, Sam (2013): Data S1. Results of the analyses considering developmental time, supplementary figures and tables & Video S1. PANGAEA, https://doi.org/10.1594/PANGAEA.819167

Further details:

Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4. https://cran.r-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 59.650000 * Longitude: 10.616670

Date/Time Start: 2011-01-01T00:00:00 * Date/Time End: 2011-01-31T00:00:00

Event(s):

Droebak * Latitude: 59.650000 * Longitude: 10.616670 * Date/Time Start: 2011-01-01T00:00:00 * Date/Time End: 2011-01-31T00:00:00 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2013-12-18.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Species	Species		Dorey, Narimane
2	Replicate	Repl		Dorey, Narimane
3	Growth rate	µ	mm/day	Dorey, Narimane		larval
4	Larvae, mortality, per body length	Larvae mortality/BL	%/µm	Dorey, Narimane
5	Larvae, arms, growth rate, per body length	Larvae arms µ/BL	µm/µm	Dorey, Narimane		postoral
6	Larvae, arms, growth rate, per body length	Larvae arms µ/BL	µm/µm	Dorey, Narimane		anterolateral
7	Larvae, arms, growth rate, per body length	Larvae arms µ/BL	µm/µm	Dorey, Narimane		posterodorsal
8	Larvae, arms, growth rate, per body length	Larvae arms µ/BL	µm/µm	Dorey, Narimane		preoral
9	Symmetry index	Symmetry index		Dorey, Narimane		postoral
10	Symmetry index	Symmetry index		Dorey, Narimane		anterolateral
11	Symmetry index	Symmetry index		Dorey, Narimane		posterodorsal
12	Symmetry index	Symmetry index		Dorey, Narimane		preoral
13	Width/length ratio	w/l		Dorey, Narimane		larval width, per body length
14	Larvae, arm gaps, growth rate, per body length	Larvae arm gaps µ/BL	µm/µm	Dorey, Narimane		postoral
15	Larvae, arm gaps, growth rate, per body length	Larvae arm gaps µ/BL	µm/µm	Dorey, Narimane		anterolateral
16	Larvae, arm gaps, growth rate, per body length	Larvae arm gaps µ/BL	µm/µm	Dorey, Narimane		posterodorsal
17	Stomach volume, growth rates, per body length	Stomach vol µ/BL	µm³/µm	Dorey, Narimane
18	Respiration rate, oxygen, per larvae, per body length	Resp O2/BL	pmol/h/#/µm	Dorey, Narimane
19	Larvae, mortality, daily	Larvae mortality	%/day	Dorey, Narimane
20	Larvae, arms, growth rate	Larvae arms µ	µm/day	Dorey, Narimane		postoral
21	Larvae, arms, growth rate	Larvae arms µ	µm/day	Dorey, Narimane		anterolateral
22	Larvae, arms, growth rate	Larvae arms µ	µm/day	Dorey, Narimane		posterodorsal
23	Larvae, arms, growth rate	Larvae arms µ	µm/day	Dorey, Narimane		preoral
24	Larvae, width, growth rate	Larvae width µ	µm/day	Dorey, Narimane
25	Larvae, arm gaps, growth rate	Larvae arm gaps µ	µm/day	Dorey, Narimane		postoral
26	Larvae, arm gaps, growth rate	Larvae arm gaps µ	µm/day	Dorey, Narimane		anterolateral
27	Larvae, arm gaps, growth rate	Larvae arm gaps µ	µm/day	Dorey, Narimane		posterodorsal
28	Stomach volume, growth rates	Stomach vol µ	µm³/day	Dorey, Narimane
29	Respiration rate, oxygen, per larvae	Resp O2/larv	pmol/h/#/day	Dorey, Narimane
30	Salinity	Sal		Dorey, Narimane
31	Salinity, standard deviation	Sal std dev	±	Dorey, Narimane
32	pH	pH		Dorey, Narimane		total scale
33	pH, standard deviation	pH std dev	±	Dorey, Narimane		total scale
34	Temperature, water	Temp	°C	Dorey, Narimane
35	Temperature, water, standard deviation	Temp std dev	±	Dorey, Narimane
36	Alkalinity, total	AT	µmol/kg	Dorey, Narimane
37	Alkalinity, total, standard deviation	AT std dev	±	Dorey, Narimane
38	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Dorey, Narimane	Calculated using seacarb
39	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Dorey, Narimane	Calculated using seacarb
40	Aragonite saturation state	Omega Arg		Dorey, Narimane	Calculated using seacarb
41	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Dorey, Narimane	Calculated using seacarb
42	Calcite saturation state	Omega Cal		Dorey, Narimane	Calculated using seacarb
43	Calcite saturation state, standard deviation	Omega Cal std dev	±	Dorey, Narimane	Calculated using seacarb
44	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
45	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
46	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
47	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
48	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
49	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
50	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
51	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
52	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

1309 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Species	2 Repl	3 µ [mm/day] (larval)	4 Larvae mortality/BL [%/µm]	5 Larvae arms µ/BL [µm/µm] (postoral)	6 Larvae arms µ/BL [µm/µm] (anterolateral)	7 Larvae arms µ/BL [µm/µm] (posterodorsal)	8 Larvae arms µ/BL [µm/µm] (preoral)	9 Symmetry index (postoral)	10 Symmetry index (anterolateral)	11 Symmetry index (posterodorsal)	12 Symmetry index (preoral)	13 w/l (larval width, per body length)	14 Larvae arm gaps µ/BL [µm/µm] (postoral)	15 Larvae arm gaps µ/BL [µm/µm] (anterolateral)	16 Larvae arm gaps µ/BL [µm/µm] (posterodorsal)	17 Stomach vol µ/BL [µm³/µm]	18 Resp O2/BL [pmol/h/#/µm]	19 Larvae mortality [%/day]	20 Larvae arms µ [µm/day] (postoral)	21 Larvae arms µ [µm/day] (anterolateral)	22 Larvae arms µ [µm/day] (posterodorsal)	23 Larvae arms µ [µm/day] (preoral)	24 Larvae width µ [µm/day]	25 Larvae arm gaps µ [µm/day] (postoral)	26 Larvae arm gaps µ [µm/day] (anterolateral)	27 Larvae arm gaps µ [µm/day] (posterodorsal)	28 Stomach vol µ [µm³/day]	29 Resp O2/larv [pmol/h/#/day]	30 Sal	31 Sal std dev [±]	32 pH (total scale)	33 pH std dev [±] (total scale)	34 Temp [°C]	35 Temp std dev [±]	36 AT [µmol/kg]	37 AT std dev [±]	38 pCO2water_SST_wet [µatm] (Calculated using seacarb)	39 pCO2 std dev [±] (Calculated using seacarb)	40 Omega Arg (Calculated using seacarb)	41 Omega Arg std dev [±] (Calculated using seacarb)	42 Omega Cal (Calculated using seacarb)	43 Omega Cal std dev [±] (Calculated using seacarb)	44 CSC flag (Calculated using seacarb afte...)	45 CO2 [µmol/kg] (Calculated using seacarb afte...)	46 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	47 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	48 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	49 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	50 DIC [µmol/kg] (Calculated using seacarb afte...)	51 Omega Arg (Calculated using seacarb afte...)	52 Omega Cal (Calculated using seacarb afte...)
Strongylocentrotus droebachiensis (echinoderm)	6.5a	-0.0055	-18.40									0.63						8.56					-1.75						31.9	0.2	6.44	0.04	9.28	0.05	2400	600	19928	6030	0.06	0.01	0.09	0.02	8	895	19641	19566	2391	4	3290	0.06	0.09
Strongylocentrotus droebachiensis (echinoderm)	6.5b	0.0071	11.60									0.89						7.77					2.63						31.9	0.2	6.50	0.03	9.48	0.15	2400	500	17136	2246	0.06	0.02	0.10	0.03	8	775	17122	17056	2390	4	3169	0.06	0.10
Strongylocentrotus droebachiensis (echinoderm)	6.5c	-0.0035	-28.70									0.64						8.60					-1.89						31.9	0.2	6.45	0.06	9.33	0.10	2300	400	18061	2557	0.05	0.02	0.09	0.02	8	837	18399	18328	2292	4	3132	0.05	0.09
Strongylocentrotus droebachiensis (echinoderm)	7.1a	0.0390	0.85	1.3	0.28	1.00		0.88	0.75	0.68		0.17	1.09	0.16	0.61	13718	0.54	3.67	11.00	1.69	6.79		0.73	10.90	1.58	7.67	89837	2.32	31.9	0.2	6.98	0.04	9.38	0.05	2300	400	5493	965	0.18	0.04	0.29	0.06	8	244	5382	5361	2270	12	2527	0.18	0.29
Strongylocentrotus droebachiensis (echinoderm)	7.1b	0.0380	0.99	0.9	0.14	0.27		0.91	0.69	0.55		0.03	1.20	0.22	1.04	2138	0.63	4.16	15.20	6.18			-1.78	24.80	0.54		54194	2.30	31.9	0.2	7.01	0.67	9.68	0.13	2400	400	11324	15426	0.47	0.68	0.74	1.08	8	236	5247	5227	2367	14	2616	0.21	0.33
Strongylocentrotus droebachiensis (echinoderm)	7.1c	0.0730	0.51	1.7	0.76	0.89		0.92	0.80	0.60		0.45	0.64	0.24	0.54	11707	0.91	4.75	19.30	9.24	9.19		6.10	8.60	3.63	5.42	113094	7.59	31.9	0.2	7.11	0.04	9.30	0.12	2400	400	4066	942	0.25	0.04	0.40	0.06	8	189	4143	4127	2359	17	2564	0.26	0.41
Strongylocentrotus droebachiensis (echinoderm)	7.3a	0.0840	0.36	1.9	0.69	0.73	0.014	0.92	0.84	0.70	0.64	0.55	0.96	0.25	0.12	8059	0.31	4.17	21.20	7.39	7.01	2.25	7.75	10.60	2.96	-0.65	87305	2.82	31.9	0.2	7.25	0.03	9.23	0.10	2500	500	3018	560	0.36	0.08	0.58	0.13	8	142	3105	3093	2442	24	2607	0.37	0.58
Strongylocentrotus droebachiensis (echinoderm)	7.3b	0.0830	0.36	2.0	0.75	0.72	-0.030	0.92	0.84	0.78	0.74	0.52	1.00	0.22	-0.19	7255	0.55	4.20	24.20	10.70	12.40	1.36	7.77	12.30	2.48	-4.46	87726	5.52	31.9	0.2	7.19	0.05	9.25	0.13	2500	400	3613	888	0.32	0.06	0.51	0.10	8	163	3576	3562	2449	21	2633	0.32	0.51
Strongylocentrotus droebachiensis (echinoderm)	7.3c	0.0720	0.10	1.8	0.82	0.91	0.184	0.91	0.84	0.83	0.70	0.59	1.47	0.29	0.93	7624	0.81	0.67	13.50	7.22	6.98	4.81	5.98	10.30	1.50	7.01	51760	6.26	31.9	0.2	7.24	0.06	9.48	0.05	2500	500	3164	490	0.37	0.10	0.58	0.16	8	144	3184	3172	2442	24	2610	0.36	0.57
Strongylocentrotus droebachiensis (echinoderm)	7.5a	0.0660	0.33	1.2	0.46	0.22		0.93	0.73	0.75		0.39	0.71	0.21	0.39	5766	0.27	3.07	2.93	-1.92	3.55		5.46	3.38	-0.27	2.85	19514	2.53	31.9	0.2	7.42	0.03	9.25	0.13	2500	600	2069	405	0.55	0.15	0.87	0.24	8	95	2076	2068	2415	35	2544	0.54	0.85
Strongylocentrotus droebachiensis (echinoderm)	7.5b	0.0690	0.54	1.6	0.73	-0.25	0.605	0.93	0.86	0.79	0.86	0.34	0.74	0.01	-0.36	2173	0.61	4.55	10.30	3.86	6.35	4.66	4.49	7.37	0.75	8.39	16178	6.08	31.9	0.2	7.34	0.10	9.23	0.13	2400	500	2477	600	0.45	0.18	0.72	0.29	8	110	2409	2400	2331	28	2469	0.43	0.68
Strongylocentrotus droebachiensis (echinoderm)	7.5c	0.0950	0.33	2.0	1.13	1.39	0.590	0.93	0.85	0.80	0.89	0.54	0.85	0.21	0.49	7115	0.74	4.07	26.70	14.60	22.20	10.70	7.76	13.00	2.99	7.34	83966	7.19	31.9	0.2	7.44	0.03	9.50	0.10	2300	400	1867	269	0.53	0.11	0.83	0.18	8	82	1823	1816	2216	34	2332	0.52	0.82
Strongylocentrotus droebachiensis (echinoderm)	7.7a	0.0890	0.23	2.6	1.23	1.13	0.055	0.95	0.86	0.87	0.60	0.44	1.63	0.29	0.51	7057	0.83	3.37	32.60	17.20	26.80		7.64	22.00	3.99	28.60	77133	8.39	31.9	0.2	7.34	0.17	9.18	0.17	2500	700	2475	312	0.52	0.36	0.83	0.56	8	115	2509	2500	2429	29	2573	0.45	0.71
Strongylocentrotus droebachiensis (echinoderm)	7.7b	0.0940	0.14	1.5	0.64	0.81	0.418	0.94	0.88	0.79	0.70	0.48	0.93	0.22	0.48	5610	0.53	1.79	11.10	4.21	5.05	3.58	6.90	8.97	1.92	4.47	31563	4.48	31.9	0.2	7.64	0.01	9.15	0.13	2500	600	1241	302	0.86	0.19	1.36	0.30	8	56	1223	1218	2362	57	2475	0.87	1.37
Strongylocentrotus droebachiensis (echinoderm)	7.7c	0.0840	0.41	1.9	0.88	1.32	0.284	0.93	0.86	0.86	0.87	0.45	1.10	0.31	0.58	5006	0.47	4.79	13.20	4.16	7.05	1.08	5.04	7.67	2.34	-1.23	28442	4.33	31.9	0.2	7.67	0.11	9.38	0.10	2600	600	1161	145	1.02	0.48	1.62	0.76	8	54	1184	1180	2447	63	2564	0.97	1.54
Strongylocentrotus droebachiensis (echinoderm)	7.7e	0.0920	0.22	3.0	1.44	0.57	-0.037	0.94	0.92	0.85	0.73	0.44	1.47	0.35	0.60	5170		3.19	38.10	19.70	35.90		7.73	21.00	4.49	36.40	50028		31.9	0.2	7.62	0.05	9.25	0.06	2500	400	1272	90	0.86	0.23	1.35	0.36	8	59	1284	1279	2367	54	2480	0.83	1.32
Strongylocentrotus droebachiensis (echinoderm)	7.7f	0.0930	0.36	2.1	0.94	0.55	0.033	0.95	0.89	0.78	0.76	0.40	1.03	0.27	-0.15	5305		4.23	32.00	13.00	20.20		7.76	18.20	4.36	27.70	83667		31.9	0.2	7.59	0.02	9.40	0.08	2500	600	1353	260	0.79	0.21	1.24	0.33	8	63	1382	1377	2375	51	2489	0.79	1.24
Strongylocentrotus droebachiensis (echinoderm)	7.7g	0.0870	0.38	2.4	1.35	0.84	0.152	0.95	0.91	0.78	0.73	0.39	0.86	0.25	-0.13	5321		4.35	37.00	21.80	21.10	4.57	6.60	16.50	4.50	-1.29	76107		31.9	0.2	7.71	0.14	9.30	0.12	2420	300	1053	396	0.99	0.16	1.56	0.25	8	45	998	994	2263	64	2372	0.98	1.56
Strongylocentrotus droebachiensis (echinoderm)	7.9a	0.0960	0.29	2.6	1.36	0.77	0.032	0.95	0.93	0.88	0.73	0.40	1.76	0.39	0.60	6785	0.25	3.96	35.00	19.40	25.50	5.13	7.55	23.60	5.15	18.50	89457	2.02	31.9	0.2	7.78	0.17	9.18	0.05	2400	500	854	213	1.22	0.51	1.93	0.80	8	38	833	829	2219	74	2331	1.13	1.78
Strongylocentrotus droebachiensis (echinoderm)	7.9b	0.0880	-0.01	2.1	1.23	1.43	0.553	0.93	0.88	0.85	0.83	0.45	1.37	0.39	1.02	5423	0.60	-0.25	13.30	7.22	9.21	6.95	5.67	8.86	3.31	1.18	33796	5.75	31.9	0.2	7.74	0.04	9.43	0.10	2500	600	968	277	1.09	0.25	1.73	0.39	8	43	959	955	2327	71	2442	1.09	1.72
Strongylocentrotus droebachiensis (echinoderm)	7.9c	0.0850	0.15	2.5	1.60	1.32	1.021	0.94	0.92	0.83	0.91	0.45	1.69	0.33	0.87	4650	0.19	2.23	14.20	9.91	11.60	8.76	6.26	11.90	2.71	4.20	46623	2.22	31.9	0.2	7.83	0.02	9.13	0.10	2500	700	768	225	1.31	0.36	2.08	0.57	8	35	766	763	2293	85	2413	1.30	2.06
Strongylocentrotus droebachiensis (echinoderm)	8.1a	0.1010	0.36	2.6	1.53	1.63	0.214	0.95	0.92	0.82	0.72	0.40	0.98	0.18	0.56	6916	0.50	4.81	48.40	27.80	51.30	8.99	8.14	19.60	3.86	12.30	103521	5.02	31.9	0.2	7.99	0.04	9.27	0.06	2400	500	484	144	1.72	0.31	2.73	0.48	8	22	491	489	2120	114	2256	1.75	2.77
Strongylocentrotus droebachiensis (echinoderm)	8.1b	0.0940	0.43	2.7	1.50	0.97	0.061	0.94	0.91	0.85	0.80	0.33	0.57	0.17	-0.58	6655	0.26	5.02	49.60	26.10	42.40	-7.60	6.35	8.96	3.33	-61.50	125884	3.12	31.9	0.2	7.99	0.06	9.27	0.12	2300	500	474	176	1.62	0.32	2.56	0.51	8	21	470	468	2029	110	2160	1.68	2.66
Strongylocentrotus droebachiensis (echinoderm)	8.1c	0.1030	0.31	3.0	1.54	1.50	0.045	0.95	0.93	0.88	0.80	0.35	1.14	0.33	1.30	7752	0.24	4.24	49.30	25.00	38.70	4.82	6.75	18.10	5.08	32.60	110323	3.14	31.9	0.2	7.99	0.05	9.68	0.17	2600	500	531	136	1.94	0.44	3.07	0.69	8	24	533	531	2296	126	2446	1.93	3.05
Strongylocentrotus droebachiensis (echinoderm)	8.1e	0.0930	0.36	2.9	1.71	1.27	0.208	0.97	0.87	0.87	0.73	0.26	0.31	0.25	-0.12	5501		4.16	37.90	21.90	39.60	4.50	4.44	7.78	4.16	4.85	68693		31.9	0.2	7.99	0.05	9.23	0.01	2480	500	561	142	1.79	0.43	2.84	0.68	8	23	507	505	2192	118	2334	1.81	2.86
Strongylocentrotus droebachiensis (echinoderm)	8.1f	0.1000	0.32	3.5	1.73	1.65	0.009	0.95	0.93	0.91	0.80	0.39	1.23	0.28	1.05	6881		4.31	47.20	25.30	36.30	9.72	7.19	18.10	4.11	30.30	87254		31.9	0.2	8.00	0.03	9.38	0.05	2500	500	498	102	1.89	0.42	2.99	0.37	8	23	499	497	2203	122	2348	1.87	2.96
Strongylocentrotus droebachiensis (echinoderm)	8.1g	0.0910	0.34	2.8	1.54	1.41	0.775	0.96	0.93	0.87	0.85	0.38	0.50	0.23	0.12	7458		4.11	20.00	12.50	11.10	7.03	4.48	2.01	1.18	-3.60	53609		31.9	0.2	8.00	0.05	9.25	0.13	2500	500	491	102	1.88	0.48	2.97	0.75	8	23	498	497	2204	122	2349	1.86	2.95