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Grünke, Stefanie; Boetius, Antje (2011): Relative abundance of prokaryotes in bacterial mat covered cold seep sediments of the Nile Deep Sea Fan [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.818003, In supplement to: Grünke, Stefanie; Felden, Janine; Lichtschlag, Anna; Girnth, Anne-Christin; de Beer, Dirk; Wenzhöfer, Frank; Boetius, Antje (2011): Niche differentiation among mat-forming, sulfide-oxidizing bacteria at cold seeps of the Nile Deep Sea Fan (Eastern Mediterranean Sea). Geobiology, 9(4), 330-348, https://doi.org/10.1111/j.1472-4669.2011.00281.x

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Project(s):
Hotspot Ecosystem Research on the Margins of European Seas (HERMES)
Funding:
Sixth Framework Programme (FP6), grant/award no. 511234: Hotspot Ecosystem Research on the Margins of European Seas
Coverage:
Median Latitude: 32.423223 * Median Longitude: 31.255873 * South-bound Latitude: 32.367690 * West-bound Longitude: 30.352170 * North-bound Latitude: 32.533150 * East-bound Longitude: 31.711030
Date/Time Start: 2006-10-25T01:01:00 * Date/Time End: 2006-10-29T21:39:00
Minimum DEPTH, sediment/rock: 0.005 m * Maximum DEPTH, sediment/rock: 0.150 m
Event(s):
M70/2a_760_PUC-40 (760-40) * Latitude: 32.368830 * Longitude: 31.711030 * Date/Time: 2006-10-25T01:01:00 * Elevation: -1122.0 m * Location: Amon Mud Volcano * Campaign: M70/2a (BIONIL) * Basis: Meteor (1986) * Method/Device: Push corer (PUC) * Comment: PUC-40
M70/2a_765_PUC-49 (765-49) * Latitude: 32.367690 * Longitude: 31.704420 * Date/Time: 2006-10-26T18:18:00 * Elevation: -1158.0 m * Location: Amon Mud Volcano * Campaign: M70/2a (BIONIL) * Basis: Meteor (1986) * Method/Device: Push corer (PUC) * Comment: PUC-49
M70/2a_773_PUC-38 (773-38) * Latitude: 32.533150 * Longitude: 30.352170 * Date/Time: 2006-10-29T21:39:00 * Elevation: -1698.0 m * Location: Pockmark area * Campaign: M70/2a (BIONIL) * Basis: Meteor (1986) * Method/Device: Push corer (PUC) * Comment: PC 38 put in
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Event labelEvent
2Latitude of eventLatitude
3Longitude of eventLongitude
4DEPTH, sediment/rockDepth sedmGeocode
5Prokaryotes, abundance as single cellsProk cell abund109 #/cm3Grünke, StefanieFluorescence determination of DAPI stain
6Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probeEUB338 I-III%Grünke, StefanieCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 30%; hybridization temperature = 46°C; washing temperature = 46°C
7Archaea, targed with ARCH915 oligonucleotide FISH-probeARCH915%Grünke, StefanieCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 30%; hybridization temperature = 46°C; washing temperature = 46°C
8Anaerobic methanotrophic archaea-1, targeted with ANME-1-350 oligonucleotide FISH-probeANME-1-350%Grünke, StefanieCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 40%; hybridization temperature = 46°C; washing temperature = 46°C
9Anaerobic methanotrophic archaea-2a, targeted with ANME-2a-647 oligonucleotide FISH-probeANME-2a-647%Grünke, StefanieCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 55%; hybridization temperature = 46°C; washing temperature = 46°C
10Anaerobic methanotrophic archaea-3, targeted with ANME-3-1249 oligonucleotide FISH-probeANME-3-1249%Grünke, StefanieCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 40%; hybridization temperature = 46°C; washing temperature = 46°C
11Desulfusarcina/Desulfococcus, targeted with DSS658 oligonucleotide FISH-probeDSS658%Grünke, StefanieCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 60%; hybridization temperature = 46°C; washing temperature = 46°C
12Acrobacter spp., targeted with ARC94 oligonucleotide FISH-probeARC94%Grünke, StefanieCatalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)Hybridization conditions: formamide concentration = 20%; hybridization temperature = 46°C; washing temperature = 48°C
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
143 data points

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