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Jury, Christopher P; Whitehead, Robert F; Szmant, A M (2010): Seawater carbonate chemistry and calcification during experiments with a coral Madracis auretenra, 2010 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.729055, Supplement to: Jury, CP et al. (2010): Effects of variations in carbonate chemistry on the calcification rates of Madracis auretenra (= Madracis mirabilis sensu Wells, 1973): bicarbonate concentrations best predict calcification rates. Global Change Biology, 16(5), 1632-1644, https://doi.org/10.1111/j.1365-2486.2009.02057.x

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Abstract:
Physiological data and models of coral calcification indicate that corals utilize a combination of seawater bicarbonate and (mainly) respiratory CO2 for calcification, not seawater carbonate. However, a number of investigators are attributing observed negative effects of experimental seawater acidification by CO2 or hydrochloric acid additions to a reduction in seawater carbonate ion concentration and thus aragonite saturation state. Thus, there is a discrepancy between the physiological and geochemical views of coral biomineralization. Furthermore, not all calcifying organisms respond negatively to decreased pH or saturation state. Together, these discrepancies suggest that other physiological mechanisms, such as a direct effect of reduced pH on calcium or bicarbonate ion transport and/or variable ability to regulate internal pH, are responsible for the variability in reported experimental effects of acidification on calcification. To distinguish the effects of pH, carbonate concentration and bicarbonate concentration on coral calcification, incubations were performed with the coral Madracis auretenra (= Madracis mirabilis sensu Wells, 1973) in modified seawater chemistries. Carbonate parameters were manipulated to isolate the effects of each parameter more effectively than in previous studies, with a total of six different chemistries. Among treatment differences were highly significant. The corals responded strongly to variation in bicarbonate concentration, but not consistently to carbonate concentration, aragonite saturation state or pH. Corals calcified at normal or elevated rates under low pH (7.6-7.8) when the seawater bicarbonate concentrations were above 1800 µm. Conversely, corals incubated at normal pH had low calcification rates if the bicarbonate concentration was lowered. These results demonstrate that coral responses to ocean acidification are more diverse than currently thought, and question the reliability of using carbonate concentration or aragonite saturation state as the sole predictor of the effects of ocean acidification on coral calcification.
Keyword(s):
Animalia; Benthic animals; Benthos; Calcification/Dissolution; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Madracis mirabilis; Not applicable; Single species; Tropical
Funding:
Seventh Framework Programme (FP7), grant/award no. 211384: European Project on Ocean Acidification
Sixth Framework Programme (FP6), grant/award no. 511106: European network of excellence for Ocean Ecosystems Analysis
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
DateDateSzmant, A M
IdentificationIDSzmant, A M
Experimental treatmentExp treatSzmant, A M
Carbonate system computation flagCSC flagNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
SalinitySalSzmant, A M
Temperature, waterTemp°CSzmant, A M
Radiation, photosynthetically activePARµmol/m2/sSzmant, A M
pHpHSzmant, A Mm-cresol purple, Clayton & Byrne 1993Total scale
Alkalinity, totalATµmol/kgSzmant, A MAlkalinity, measured accrding to Yao and Byrne (1998)
10 Carbon dioxideCO2µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
11 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
12 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
13 Bicarbonate ion[HCO3]-µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
14 Carbonate ion[CO3]2-µmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
15 Carbon, inorganic, dissolvedDICµmol/kgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
16 Aragonite saturation stateOmega ArgNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
17 Calcite saturation stateOmega CalNisumaa, Anne-MarinCalculated using seacarb after Nisumaa et al. (2010)
18 Calcification rate of calcium carbonateCalc rate CaCO3µmol/cm2/hSzmant, A MAluminium foil method (Marsh, 1970)Coral 1
19 Calcification rate of calcium carbonateCalc rate CaCO3µmol/cm2/hSzmant, A MAluminium foil method (Marsh, 1970)Coral 2
20 Calcification rate of calcium carbonateCalc rate CaCO3µmol/cm2/hSzmant, A MAluminium foil method (Marsh, 1970)Coral 3
21 Calcification rate of calcium carbonateCalc rate CaCO3µmol/cm2/hSzmant, A MAluminium foil method (Marsh, 1970)Coral 4
22 Calcification rate of calcium carbonateCalc rate CaCO3µmol/cm2/hSzmant, A MAluminium foil method (Marsh, 1970)Coral 5
23 Calcification rate of calcium carbonateCalc rate CaCO3µmol/cm2/hSzmant, A MAluminium foil method (Marsh, 1970)Coral 6
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
880 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Date

ID

Exp treat

CSC flag
(Calculated using seacarb afte...)

Sal

Temp [°C]

PAR [µmol/m2/s]

pH
(Total scale, m-cresol purple,...)

AT [µmol/kg]
(Alkalinity, measured accrding...)
10 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
11 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
12 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
13 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
14 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
15 
DIC [µmol/kg]
(Calculated using seacarb afte...)
16 
Omega Arg
(Calculated using seacarb afte...)
17 
Omega Cal
(Calculated using seacarb afte...)
18 
Calc rate CaCO3 [µmol/cm2/h]
(Coral 1, Aluminium foil metho...)
19 
Calc rate CaCO3 [µmol/cm2/h]
(Coral 2, Aluminium foil metho...)
20 
Calc rate CaCO3 [µmol/cm2/h]
(Coral 3, Aluminium foil metho...)
21 
Calc rate CaCO3 [µmol/cm2/h]
(Coral 4, Aluminium foil metho...)
22 
Calc rate CaCO3 [µmol/cm2/h]
(Coral 5, Aluminium foil metho...)
23 
Calc rate CaCO3 [µmol/cm2/h]
(Coral 6, Aluminium foil metho...)
2007-05-08Incubation 1Control836281108.0824329.80374.38373.241785.51264.942060.24.236.350.3310.3990.342
2007-08-08Incubation 1Low pH, low carb836281107.81245120.98801.80799.372053.58163.642238.22.623.920.5030.5410.445
2007-10-08Incubation 1Low pH, low carb836281108.0514866.33242.01241.271077.15149.161232.62.383.580.2080.2720.213
2007-11-08Incubation 1Control836281108.05243910.72409.68408.441823.45252.512086.74.046.060.4130.4760.406
2007-08-13Incubation 1Control836281108.04245311.10424.20422.911845.08249.692105.93.995.990.4930.4690.372
2007-08-14Incubation 1Low pH, norm carb836281107.80416137.011414.661410.373540.79275.733853.54.416.610.6720.5450.480
2007-08-15Incubation 1Control836281108.06245010.46399.88398.671821.30258.092089.84.126.190.4860.5510.443
2007-08-17Incubation 1Control836281108.06246110.21390.27389.091818.93263.762092.94.216.320.5000.5400.442
2007-08-30Incubation 1Control836281108.07244610.15387.78386.601807.30262.072079.54.196.280.6720.5980.607
2007-08-09Incubation 1Low pH, low carb836281107.78246822.89874.77872.112090.94155.502269.32.483.730.2070.4090.509
2008-08-01Incubation 1Very low pH, very low carb836281107.61247535.721365.371361.222206.46110.942353.11.772.660.4260.5080.385
2008-12-01Incubation 1Control836281108.08252010.17388.61387.431853.37275.012138.54.396.590.4770.6580.533
2008-01-20Incubation 1Norm pH, very low carb836281108.0610934.39167.74167.23763.96108.26876.61.732.600.2680.2230.236
2008-01-21Incubation 1Control836281108.07248710.32394.60393.401839.09266.682116.14.266.390.4380.4170.431
2007-05-08Incubation 2Control836281108.04244711.07423.11421.831840.35249.052100.53.985.970.3560.4070.327
2007-08-08Incubation 2Control836281108.04247910.90416.72415.461854.78256.852122.54.106.160.3930.3730.336
2007-10-08Incubation 2Control836281108.06249810.68408.10406.861858.70263.392132.84.216.320.4190.4280.381
2007-11-08Incubation 2Low pH, norm carb836281107.80419937.361427.801423.463573.66278.293889.34.456.670.5830.5800.437
2007-08-13Incubation 2Low pH, low carb836281107.80247521.76831.82829.302081.99162.132265.92.593.890.4330.3690.311
2007-08-14Incubation 2Control836281108.07241710.02382.96381.791784.82258.812053.74.146.210.5290.4170.397
2007-08-15Incubation 2Control836281108.06248210.30393.77392.571835.21266.122111.64.256.380.4240.4180.363
2007-08-17Incubation 2Norm pH, low carb836281108.0615756.55250.19249.431139.52161.481307.52.583.870.3140.2890.259
2007-08-30Incubation 2Low pH, low carb836281107.78243222.54861.66859.042059.60153.172235.32.453.670.6840.6290.622
2007-08-09Incubation 2Control836281108.08248010.00382.14380.981822.52270.432103.04.326.480.1950.3330.406
2008-08-01Incubation 2Control836281108.07246710.24391.27390.081823.58264.432098.34.236.340.3750.4480.353
2008-12-01Incubation 2Very low pH, very low carb836281107.61249436.001376.051371.872223.73111.812371.51.792.680.4000.5230.391
2008-01-20Incubation 2Control836281108.05252411.11424.64423.351890.02261.732162.94.186.280.5990.5320.515
2008-01-21Incubation 2Norm pH, very low carb836281108.0611264.54173.38172.85789.67111.90906.11.792.680.2140.1870.209
2007-07-10Incubation 1Low pH, low carb836281107.79243822.01841.17838.622057.46156.572236.02.503.750.2960.2120.336
2007-08-10Incubation 1Control836281108.08248510.02382.95381.791826.38271.012107.44.336.500.3150.2710.373
2007-09-10Incubation 1Control836281108.07245010.16388.44387.261810.40262.522083.14.206.300.3880.3690.484
2007-10-14Incubation 1Low pH, norm carb836281107.78415538.961489.171484.643559.51264.723863.24.236.350.3170.3520.455
2007-10-20Incubation 1Norm pH, low carb836281108.0715056.05231.27230.561077.85156.301240.22.503.750.1230.1710.205
2007-10-21Incubation 1Control836281108.07246410.22390.77389.591821.26264.102095.64.226.330.3180.3130.367
2007-04-11Incubation 1Control836281108.06243510.40397.32396.111809.61256.432076.44.106.150.2860.3030.297
2007-11-28Incubation 1Control836281108.0824449.85376.32375.181794.76266.322070.94.266.390.3040.3200.357
2007-07-10Incubation 2Control836281108.0824639.93379.39378.241809.41268.492087.84.296.440.2810.1850.336
2007-08-10Incubation 2Low pH, norm carb836281107.79426538.971489.451484.933643.12277.243959.34.436.650.3790.3050.408
2007-09-10Incubation 2Control836281108.07246710.24391.27390.081823.58264.432098.34.236.340.3930.3290.437
2007-10-14Incubation 2Control836281108.0824739.97381.01379.851817.12269.632096.74.316.470.2710.2970.361
2007-10-20Incubation 2Control836281108.0824429.84376.00374.861793.22266.092069.14.256.380.2490.2640.359
2007-10-21Incubation 2Norm pH, low carb836281108.0614946.18236.34235.621076.41152.531235.12.443.660.1690.1730.234
2007-04-11Incubation 2Control836281108.07248410.31394.10392.901836.76266.342113.44.266.390.2760.3120.323
2007-11-28Incubation 2Low pH, low, carb836281107.78246322.84872.95870.302086.58155.182264.62.483.720.3290.3690.414