Chaffron, Samuel; d'Ovidio, Francesco; Sunagawa, Shinichi; Acinas, Silvia G; Coelho, Luis Pedro; De Monte, Silvia; Salazar, Guillem; Pesant, Stephane; Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2014): Biodiversity context of selected samples from the Tara Oceans Expedition (2009-2013) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.840698
Always quote citation above when using data! You can download the citation in several formats below.
Alert Replaced by:
Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2015): Biodiversity context of all samples from the Tara Oceans Expedition (2009-2013). PANGAEA, https://doi.org/10.1594/PANGAEA.853809
Abstract:
The present data set provides contextual data for samples from the Tara Oceans Expedition (2009-2013) that were selected for publication in a special issue of the SCIENCE journal (see related references below). Contextual data include various diversity indexes calculated for the sampling location using satellite and model climatologies (Darwin project, Physat) and results from the sequencing of Tara Oceans samples.
Related to:
Brum, Jennifer R; Ignacio-Espinoza, Julio; Roux, Simon; Doulcier, Guilhem; Acinas, Silvia G; Alberti, Adriana; Chaffron, Samuel; Cruaud, Corinne; De Vargas, Colomban; Gasol, Josep M; Gorsky, G; Gregory, Ann C; Guidi, L; Hingamp, Pascal; Iudicone, Daniele; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stephane; Poulos, Bonnie T; Schwenk, Sarah M; Speich, Sabrina; Dimier, Céline; Kandels-Lewis, Stefanie; Picheral, Marc; Searson, Sarah; Tara Oceans Consortium, Coordinators; Bork, Peer; Bowler, Chris; Sunagawa, Shinichi; Wincker, Patrick; Karsenti, Eric; Sullivan, Matthew B (2015): Patterns and ecological drivers of ocean viral communities. Science, 348(6237), 1261498-1261498, https://doi.org/10.1126/science.1261498
De Vargas, Colomban; Audic, Stephane; Henry, Nicolas; Decelle, Johan; Mahe, Jean-Claude; Logares, Ramiro; Lara, Enrique; Berney, Cédric; Le Bescot, Noan; Probert, Ian; Carmichael, Margaux; Poulain, Julie; Romac, Sarah; Colin, Sébastien; Aury, Jean-Marc; Bittner, Lucie; Chaffron, Samuel; Dunthorn, Micah; Engelen, Stefan; Flegontova, Olga; Guidi, L; Horák, Aleš; Jaillon, Olivier; Lima-Mendez, Gipsi; Lukes, Julius; Malviya, Shruti; Morard, Raphael; Mulot, Matthieu; Scalco, Eleonora; Siano, Raffaele; Vincent, Flora; Zingone, Adriana; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Acinas, Silvia G; Bork, Peer; Bowler, Chris; Gorsky, G; Grimsley, Nigel; Hingamp, Pascal; Iudicone, Daniele; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stephane; Raes, Jeroen; Sieracki, Michael E; Speich, Sabrina; Stemmann, Lars; Sunagawa, Shinichi; Weissenbach, Jean; Wincker, Patrick; Karsenti, Eric; Boss, Emmanuel; Follows, Michael J; Karp-Boss, Lee; Krzic, Uros; Sardet, Christian; Sullivan, Matthew B; Velayoudon, Didier (2015): Eukaryotic plankton diversity in the sunlit ocean. Science, 348(6237), 1261605-1261605, https://doi.org/10.1126/science.1261605
Lima-Mendez, Gipsi; Faust, Karoline; Henry, Nicolas; Decelle, Johan; Colin, Sébastien; Carcillo, Fabrizio; Chaffron, Samuel; Ignacio-Espinosa, J Cesar; Roux, Simon; Vincent, Flora; Bittner, Lucie; Darzi, Youssef; Wang, Jun; Audic, Stephane; Berline, L; Bontempi, Gianluca; Cabello, Ana María; Coppola, L; Cornejo-Castillo, Francisco M; d'Ovidio, Francesco; De Meester, Luc; Ferrera, Isabel; Garet-Delmas, Marie-José; Guidi, L; Lara, Enrique; Pesant, Stephane; Royo-Llonch, Marta; Salazar, Guillem; Sánchez, Pablo; Sebastian, Marta; Souffreau, Caroline; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Gorsky, G; Not, Fabrice; Ogata, Hiroyuki; Speich, Sabrina; Stemmann, Lars; Weissenbach, Jean; Wincker, Patrick; Acinas, Silvia G; Sunagawa, Shinichi; Bork, Peer; Sullivan, Matthew B; Karsenti, Eric; Bowler, Chris; De Vargas, Colomban; Raes, Jeroen (2015): Determinants of community structure in the global plankton interactome. Science, 348(6237), 1262073-1262073, https://doi.org/10.1126/science.1262073
Sunagawa, Shinichi; Coelho, Luis Pedro; Chaffron, Samuel; Kultima, Jens Roat; Labadie, Karine; Salazar, Guillem; Djahanschiri, Bardya; Zeller, George; Mende, Daniel R; Alberti, Adriana; Cornejo-Castillo, Francisco M; Costea, Paul I; Cruaud, Corinne; d'Ovidio, Francesco; Engelen, Stefan; Ferrera, Isabel; Gasol, Josep M; Guidi, L; Hildebrand, Falk; Kokoszka, Florian; Lepoivre, Cyrille; Lima-Mendez, Gipsi; Poulain, Julie; Poulos, Bonnie T; Royo-Llonch, Marta; Sarmento, Hugo; Vieira-Silva, Sara; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Bowler, Chris; De Vargas, Colomban; Gorsky, G; Grimsley, Nigel; Hingamp, Pascal; Iudicone, Daniele; Jaillon, Olivier; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stephane; Speich, Sabrina; Stemmann, Lars; Sullivan, Matthew B; Weissenbach, Jean; Wincker, Patrick; Karsenti, Eric; Raes, Jeroen; Acinas, Silvia G; Bork, Peer; Boss, Emmanuel; Follows, Michael J; Karp-Boss, Lee; Krzic, Uros; Sardet, Christian; Sieracki, Michael E; Velayoudon, Didier (2015): Structure and function of the global ocean microbiome. Science, 348(6237), 1261359-1261359, https://doi.org/10.1126/science.1261359
Villar, Emilie; Farrant, Gregory K; Follows, Michael J; Garczarek, Laurence; Speich, Sabrina; Audic, Stephane; Bittner, Lucie; Blanke, Bruno; Brum, Jennifer R; Brunet, Christian; Casotti, Raffaella; Chase, Alison P; Dolan, John; D'Ortenzio, Fabrizio; Gattuso, Jean-Pierre; Grima, Nicolas; Guidi, L; Hill, Christopher N; Jahn, Oliver; Jamet, Jean-Louis; Le Goff, Hervé; Lepoivre, Cyrille; Malviya, Shruti; Pelletier, Eric; Romagnan, Jean-Baptiste; Roux, Simon; Santini, Sébastien; Scalco, Eleonora; Schwenk, Sarah M; Tanaka, A; Testor, Pierre; Vannier, Thomas; Vincent, Flora; Zingone, Adriana; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Acinas, Silvia G; Bork, Peer; Boss, Emmanuel; De Vargas, Colomban; Gorsky, G; Ogata, Hiroyuki; Pesant, Stephane; Sullivan, Matthew B; Sunagawa, Shinichi; Wincker, Patrick; Karsenti, Eric; Bowler, Chris; Not, Fabrice; Hingamp, Pascal; Iudicone, Daniele (2015): Environmental characteristics of Agulhas rings affect interocean plankton transport. Science, 348(6237), 1261447-1261447, https://doi.org/10.1126/science.1261447
Project(s):
Fondation Tara Expeditions (FondTara)
Tara Oceans Expedition (Tara_Oceans_2009-2013)
Coverage:
Median Latitude: 0.690242 * Median Longitude: -26.354348 * South-bound Latitude: -62.265800 * West-bound Longitude: -159.088000 * North-bound Latitude: 43.804700 * East-bound Longitude: 74.060700
Date/Time Start: 2009-09-15T11:30:00 * Date/Time End: 2012-03-20T13:07:00
Minimum DEPTH, water: 5.122328 m * Maximum DEPTH, water: 990.778500 m
Event(s):
TARA_20090915T1130Z_004_EVENT_PUMP ([day] [surface water layer (ENVO:00002042)]) * Latitude: 36.553300 * Longitude: -6.566900 * Date/Time: 2009-09-15T11:30:00 * Campaign: TARA_20090913Z (Lisbon to Tangier, Stations: TARA_003-004) * Basis: SV Tara * Method/Device: High Volume Peristaltic Pump ([HVP-PUMP]) * Comment: [Curator: No EVENT Logsheet]
TARA_20090915T1500Z_004_EVENT_NET ([day] [surface water layer (ENVO:00002042)] [proti) * Latitude: 36.553300 * Longitude: -6.566900 * Date/Time: 2009-09-15T15:00:00 * Campaign: TARA_20090913Z (Lisbon to Tangier, Stations: TARA_003-004) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-180]+[SIEVE-2000]) * Comment: Device: material from the net was poured through a [SIEVE-2000] type=metal, shape=pan, mesh size (µm)=2000, diameter (cm)=30] [Curator: Time and position of the deployment was not recorded/ We used a single position for all events of station 004 and estimated the times from best experienced guesses (SP)]
TARA_20090915T1600Z_004_EVENT_NET ([day] [deep chlorophyll maximum layer (ENVO:010003) * Latitude: 36.553300 * Longitude: -6.566900 * Date/Time: 2009-09-15T16:00:00 * Campaign: TARA_20090913Z (Lisbon to Tangier, Stations: TARA_003-004) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-180]+[SIEVE-2000]) * Comment: Device: material from the net was poured through a [SIEVE-2000] type=metal, shape=pan, mesh size (µm)=2000, diameter (cm)=30] [Curator: Time and position of the deployment was not recorded/ We used a single position for all events of station 004 and estimated the times from best experienced guesses (SP)]
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Sample ID | Sample ID | Pesant, Stephane | TARA_barcode# | ||
| 2 | Station label | Station | Pesant, Stephane | TARA_station# | ||
| 3 | Event label | Event | ||||
| 4 | Environmental feature | Env feature | Pesant, Stephane | terms registered at EnvO, the Environmental Ontology | full name (ENVO:ID) | |
| 5 | DEPTH, water | Depth water | m | Geocode | ||
| 6 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from the Darwin model | Shannon_Darwin_mean_all | |
| 7 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from the Darwin model | Shannon_Darwin_month_all | |
| 8 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from the Darwin model | Shannon_Darwin_mean_grp | |
| 9 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from the Darwin model | Shannon_Darwin_month_grp | |
| 10 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from PHYSAT data products | Shannon_Physat_month | |
| 11 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from PHYSAT data products | Shannon_Physat_mean | |
| 12 | Phylogenetic diversity | P div | Sunagawa, Shinichi | calculated using the Faith index | miTAG.SILVA.Phylo.Diversity | |
| 13 | Species diversity | Species div | Sunagawa, Shinichi | calculated using the Chaos index | miTAG.SILVA.Chao | |
| 14 | Species diversity | Species div | Sunagawa, Shinichi | calculated using the ACE index | miTAG.SILVA.ace | |
| 15 | Species diversity | Species div | Sunagawa, Shinichi | calculated using the Shannon index | OG.Shannon | |
| 16 | Species richness | S | Sunagawa, Shinichi | miTAG.SILVA.Richness | ||
| 17 | Functional diversity | wFDc | Sunagawa, Shinichi | calculated using the Shannon index | miTAG.SILVA.Shannon | |
| 18 | Functional richness | Functional richness | Sunagawa, Shinichi | OG.Richness | ||
| 19 | Functional evenness | FEve | Sunagawa, Shinichi | OG.Evenness |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
6231 data points
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