Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2015): Biodiversity context of all samples from the Tara Oceans Expedition (2009-2013) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.853809
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Abstract:
The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides biodiversity context to all samples from the Tara Oceans Expedition (2009-2013), including various diversity indexes calculated for the sampling location using satellite and model climatologies (Darwin project, Physat) and results from the sequencing of Tara Oceans samples.
Related to:
Pesant, Stephane; Tara Oceans Consortium, Coordinators; et al. (in prep.): Methodological and environmental context of Tara Oceans samples. Scientific Data
Project(s):
Fondation Tara Expeditions (FondTara)
Tara Oceans Expedition (Tara_Oceans_2009-2013)
Coverage:
Median Latitude: 22.310658 * Median Longitude: -10.664854 * South-bound Latitude: -64.349400 * West-bound Longitude: -168.550100 * North-bound Latitude: 79.673200 * East-bound Longitude: 174.991700
Date/Time Start: 2009-09-07T15:30:00 * Date/Time End: 2013-10-27T21:38:00
Event(s):
TARA_2009-2013_EVENT_unknown * Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T00:00:00 * Comment: This event is used to describe a few samples for which the sampling event is unknown
TARA_20090907T1530Z_001_EVENT_NET ([day] [water layer with no specific feature]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T15:30:00 * Campaign: TARA_20090905Z (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net, type=Bongo, mesh(µm)=300, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-300])
TARA_20090907T1610Z_001_EVENT_NET ([day] [surface water layer (ENVO:00002042)]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T16:10:00 * Campaign: TARA_20090905Z (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5 ([NET-DOUBLE-20]+[SIEVE-180])
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Sample ID | Sample ID | Pesant, Stephane | TARA_barcode# | ||
| 2 | Campaign of event | Campaign | Pesant, Stephane | |||
| 3 | Station label | Station | Pesant, Stephane | TARA_station# | ||
| 4 | Event label | Event | Pesant, Stephane | |||
| 5 | Environmental feature | Env feature | Pesant, Stephane | abbreviation | ||
| 6 | Environmental feature | Env feature | Pesant, Stephane | terms registered at EnvO, the Environmental Ontology | full name (ENVO:ID) | |
| 7 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from the Darwin model | originally reported as Shannon_Darwin_mean_all | |
| 8 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from the Darwin model | originally reported as Shannon_Darwin_month_all | |
| 9 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from the Darwin model | originally reported as Shannon_Darwin_mean_grp | |
| 10 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from the Darwin model | originally reported as Shannon_Darwin_month_grp | |
| 11 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from PHYSAT data products | originally reported as Shannon_Physat_month | |
| 12 | Species diversity | Species div | d'Ovidio, Francesco | calculated using the Shannon index from PHYSAT data products | originally reported as Shannon_Physat_mean | |
| 13 | Species diversity | Species div | Sunagawa, Shinichi | calculated using the Chaos index | originally reported as miTAG.SILVA.Chao | |
| 14 | Species diversity | Species div | Sunagawa, Shinichi | calculated using the ACE index | originally reported as miTAG.SILVA.ace | |
| 15 | Species diversity | Species div | Sunagawa, Shinichi | calculated using the Shannon index | originally reported as miTAG.SILVA.Shannon | |
| 16 | Species richness | S | Sunagawa, Shinichi | originally reported as miTAG.SILVA.Richness | ||
| 17 | Functional diversity | wFDc | Sunagawa, Shinichi | calculated using the Shannon index | originally reported as miTAG.SILVA.Shannon | |
| 18 | Functional richness | Functional richness | Sunagawa, Shinichi | originally reported as OG.Richness | ||
| 19 | Functional evenness | FEve | Sunagawa, Shinichi | originally reported as OG.Evenness |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
305075 data points
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