Traboni Claudia claudia.traboni@szn.it Stazione Zoologica Anton Dohrn SZN http://www.szn.it/ https://ror.org/03v5jj203 Nocera Ariadna C Romano Filomena Hellenic Centre for Marine Research HCMR https://ror.org/038kffh84 Courboulès Justine Chantzaras Christos Biology Department, University of Crete https://ror.org/00dr28g20 Magiopoulos Iordanis 0000-0001-6475-7326 Varliero Selene Polytechnic University of Milan https://ror.org/01nffqt88 Basso Daniela daniela.basso@unimib.it 0000-0002-9352-3569 University of Milano-Bicocca https://ror.org/01ynf4891 Pitta Paraskevi vpitta@hcmr.gr http://www.hcmr.gr/en/cv.php?id=28&resid=31 0000-0003-3557-0575 2026 Seawater carbonate chemistry and effects of ocean liming on plankton growth and grazing in the Eastern Mediterranean dataset https://doi.org/10.1594/PANGAEA.996176 2026-07-23T07:02:37 In the framework of a mesocosm experiment, we conducted three dilution incubations to assess natural plankton response (abundance, composition, growth, grazing, diet, and food selectivity) to liming, achieved with calcium hydroxide (Ca(OH)2) additions. Experiments included two liming treatments (low concentration, and high concentration) and a control treatment without Ca(OH)2. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-07-22. Traboni Claudia claudia.traboni@szn.it Nocera Ariadna C Romano Filomena Courboulès Justine Chantzaras Christos Magiopoulos Iordanis 0000-0001-6475-7326 Varliero Selene Basso Daniela daniela.basso@unimib.it 0000-0002-9352-3569 Pitta Paraskevi vpitta@hcmr.gr http://www.hcmr.gr/en/cv.php?id=28&resid=31 0000-0003-3557-0575 2025 Plankton do not care: Minimal effects of ocean liming on plankton growth and grazing in the Eastern Mediterranean journal article Limnology and Oceanography 70(S2) https://doi.org/10.1002/lno.70136 Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be 0009-0006-6766-0638 Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 20643 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Traboni Claudia claudia.traboni@szn.it Study type Figure Fig Traboni Claudia claudia.traboni@szn.it Fig Treatment Treat treatment Traboni Claudia claudia.traboni@szn.it Treat Experiment Exp Traboni Claudia claudia.traboni@szn.it Exp Chlorophyll a Chl a µg/l hdl:10013/epic.32187.d001 chlorophyll a http://purl.obolibrary.org/obo/CHEBI_18230 Density http://dbpedia.org/resource/Density Traboni Claudia claudia.traboni@szn.it Chl a [µg/l] Chlorophyll a, standard deviation Chl a std dev ± chlorophyll a http://purl.obolibrary.org/obo/CHEBI_18230 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it Chl a std dev [±] High nucleic acid bacteria HNA #/ml Traboni Claudia claudia.traboni@szn.it HNA [#/ml] High nucleic acid bacteria, standard deviation HNA std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it HNA std dev [±] Low nucleic acid bacteria LNA #/ml Traboni Claudia claudia.traboni@szn.it LNA [#/ml] Low nucleic acid bacteria, standard deviation LNA std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it LNA std dev [±] Synechococcus Synechococcus #/ml Synechococcus https://www.marinespecies.org/aphia.php?p=taxdetails&id=160572 Traboni Claudia claudia.traboni@szn.it Synechococcus [#/ml] Synechococcus, standard deviation Synechococcus std dev ± Synechococcus https://www.marinespecies.org/aphia.php?p=taxdetails&id=160572 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it Synechococcus std dev [±] Flagellates, pigmented Flagellate pigm #/l Abundance per Volume Traboni Claudia claudia.traboni@szn.it Flagellate pigm [#/l] Flagellates, pigmented, standard deviation Flagellate pigm std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it Flagellate pigm std dev [±] Diatoms Diatoms #/l Traboni Claudia claudia.traboni@szn.it Diatoms [#/l] Diatoms, standard deviation Diatoms std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it Diatoms std dev [±] Dinoflagellates Dinofl #/l dinoflagellates Traboni Claudia claudia.traboni@szn.it Dinofl [#/l] Dinoflagellates, standard deviation Dinofl std dev ± dinoflagellates standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it Dinofl std dev [±] Ciliates Ciliates #/l Traboni Claudia claudia.traboni@szn.it Ciliates [#/l] Ciliates, standard deviation Ciliates std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it Ciliates std dev [±] Growth rate µ 1/day growth rate http://purl.obolibrary.org/obo/PATO_0001492 Frequency http://dbpedia.org/resource/Frequency Traboni Claudia claudia.traboni@szn.it Chl a specific µ [1/day] (Chl a specific) Growth rate, standard deviation µ std dev ± growth rate http://purl.obolibrary.org/obo/PATO_0001492 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it Chl a specific µ std dev [±] (Chl a specific) Grazing rate Graz rate 1/day Frequency http://dbpedia.org/resource/Frequency Traboni Claudia claudia.traboni@szn.it on Chl a Graz rate [1/day] (on Chl a) Grazing rate, standard deviation Graz rate std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it on Chl a Graz rate std dev [±] (on Chl a) Group Group group http://purl.obolibrary.org/obo/CHEBI_24433 Traboni Claudia claudia.traboni@szn.it Group Growth rate µ 1/day growth rate http://purl.obolibrary.org/obo/PATO_0001492 Frequency http://dbpedia.org/resource/Frequency Traboni Claudia claudia.traboni@szn.it µ [1/day] Growth rate, standard deviation µ std dev ± growth rate http://purl.obolibrary.org/obo/PATO_0001492 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it µ std dev [±] Grazing rate Graz rate 1/day Frequency http://dbpedia.org/resource/Frequency Traboni Claudia claudia.traboni@szn.it Graz rate [1/day] Grazing rate, standard deviation Graz rate std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it Graz rate std dev [±] Growth rate µ 1/day growth rate http://purl.obolibrary.org/obo/PATO_0001492 Frequency http://dbpedia.org/resource/Frequency Traboni Claudia claudia.traboni@szn.it µ [1/day] Growth rate, standard deviation µ std dev ± growth rate http://purl.obolibrary.org/obo/PATO_0001492 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it µ std dev [±] Grazing rate Graz rate 1/day Frequency http://dbpedia.org/resource/Frequency Traboni Claudia claudia.traboni@szn.it Graz rate [1/day] Grazing rate, standard deviation Graz rate std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Traboni Claudia claudia.traboni@szn.it Graz rate std dev [±] Abundance Abund % abundance https://www.oxforddictionaries.com/definition/american_english/abundance Dimensionless Ratio ψ Traboni Claudia claudia.traboni@szn.it contribution to environment Abund [%] (contribution to environment) Abundance Abund % abundance https://www.oxforddictionaries.com/definition/american_english/abundance Dimensionless Ratio ψ Traboni Claudia claudia.traboni@szn.it contribution to diet Abund [%] (contribution to diet) Size Size size http://purl.obolibrary.org/obo/PATO_0000117 Traboni Claudia claudia.traboni@szn.it Size Electivity index E Traboni Claudia claudia.traboni@szn.it E Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Traboni Claudia claudia.traboni@szn.it Temp [°C] Irradiance E µmol photons/m**2/s hdl:10013/epic.32440.d001 Irradiance Molar Flux Traboni Claudia claudia.traboni@szn.it E [µmol photons/m**2/s] pH, NBS scale pH NBS Traboni Claudia claudia.traboni@szn.it pH NBS Alkalinity, total AT µmol/l https://en.wikipedia.org/wiki/Alkalinity total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Traboni Claudia claudia.traboni@szn.it AT [µmol/l] Salinity Sal salinity http://purl.obolibrary.org/obo/PATO_0085001 Traboni Claudia claudia.traboni@szn.it Sal Ammonium [NH4]+ µmol/l ammonium http://purl.obolibrary.org/obo/CHEBI_28938 Molar Concentration Traboni Claudia claudia.traboni@szn.it [NH4]+ [µmol/l] Nitrate [NO3]- µmol/l nitrate http://purl.obolibrary.org/obo/CHEBI_17632 Molar Concentration Traboni Claudia claudia.traboni@szn.it [NO3]- [µmol/l] Phosphate [PO4]3- µmol/l phosphate http://purl.obolibrary.org/obo/CHEBI_26020 Molar Concentration Traboni Claudia claudia.traboni@szn.it [PO4]3- [µmol/l] Silicate Si(OH)4 µmol/l Molar Concentration Traboni Claudia claudia.traboni@szn.it Si(OH)4 [µmol/l] Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CSC flag pH, total scale pHT Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pHT Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 [µmol/kg] Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2water_SST_wet [µatm] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2water_SST_wet [µatm] Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- [µmol/kg] Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- [µmol/kg] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 DIC [µmol/kg] Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 AT [µmol/kg] Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable Behaviour Biomass/Abundance/Elemental composition Coast and continental shelf Community composition and diversity Entire community Growth/Morphology Laboratory experiment Mediterranean Sea Mesocosm or benthocosm Ocean alkalinity enhancement Other studied parameter or process Pelagos Temperate author10403 author10414 author107699 author107700 author118527 author118528 author118529 author118530 author118531 author118532 author21564 author22144 author22148 author22159 author22414 author22445 author24922 author27217 author28754 author29138 author29176 author32213 author32865 author34379 author39180 author39204 author48750 author51658 author55788 author56746 author59171 author59172 author59173 author69140 author73471 curlevel30 inst1006 inst20253 inst22168 inst22376 inst22901 inst711 journal10608 journal16590 license21 method6426 param123438 param123439 param128289 param135231 param136528 param136529 param143493 param149105 param149106 param15689 param185520 param18897 param18913 param18955 param2136 param24648 param49312 param49313 param50001 param51998 param52 param534368 param534369 param54293 param54294 param567612 param567613 param567614 param567615 param567616 param567617 param716 param717 param7172 param755 param756 param758 param80114 param82111 param82364 param82365 param82366 param83744 param87073 param8914 param96164 param96224 param96278 pi118527 pi48750 project4173 ref124625 ref128879 ref140793 ref31273 ref79258 term1063232 term1073173 term1073204 term1073482 term1073484 term1073490 term1073493 term1073521 term1073594 term1073966 term1746440 term2606205 term2698012 term37764 term38253 term38477 term38538 term38841 term38846 term38851 term38855 term38858 term38859 term38887 term38892 term38894 term38896 term39424 term40646 term41013 term43298 term43792 term43794 term43821 term43834 term43838 term43861 term43972 term43998 term44023 term44029 term44030 term48166 term49506 term78027