Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 Xiamen University https://ror.org/00mcjh785 Qu Liming Xiamen University https://ror.org/00mcjh785 Henan University https://ror.org/003xyzq10 Ge Jingke Xiamen University https://ror.org/00mcjh785 Gao Kunshan ksgao@xmu.edu.cn 0000-0001-7365-6332 Xiamen University https://ror.org/00mcjh785 Jiangsu Ocean University https://ror.org/031zps173 2026 Seawater carbonate chemistry and physiological data of the diatom Thalassiosira weissflogii employed in studying the diel effects of ocean acidification dataset https://doi.pangaea.de/10.1594/PANGAEA.995743 2026-07-01T03:57:22 We comparatively investigated the physiological and transcriptional performances of a diatom Thalassiosira weissflogii acclimated to OA (pHt drop of 0.35–0.41) between day and night periods. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-07-01. Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 Qu Liming Ge Jingke Gao Kunshan ksgao@xmu.edu.cn 0000-0001-7365-6332 2026 Divergent responses of the diatom Thalassiosira weissflogii to ocean acidification during light and dark periods journal article Limnology and Oceanography Letters 11(3) https://doi.org/10.1002/lol2.70128 e70128 Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 Qu Liming Ge Jingke Gao Kunshan ksgao@xmu.edu.cn 0000-0001-7365-6332 2026 Diel effects of ocean acidification on diatom dataset Mendeley Data https://doi.org/10.17632/CJWPPWD3M5.1 Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be 0009-0006-6766-0638 Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 487 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 Study type Species, unique identification Species UID species Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 Species UID Treatment Treat treatment Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 AC=ambient, HC=high CO2 Treat (AC=ambient, HC=high CO2) Growth rate µ 1/h growth rate http://purl.obolibrary.org/obo/PATO_0001492 Frequency http://dbpedia.org/resource/Frequency Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 per 12 h, dark period µ [1/h] (per 12 h, dark period) Growth rate µ 1/h growth rate http://purl.obolibrary.org/obo/PATO_0001492 Frequency http://dbpedia.org/resource/Frequency Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 per 12 h, light period µ [1/h] (per 12 h, light period) Growth rate µ 1/day growth rate http://purl.obolibrary.org/obo/PATO_0001492 Frequency http://dbpedia.org/resource/Frequency Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 µ [1/day] Respiration rate, oxygen, per cell Resp O2/cell fmol/#/h respiration rate http://www.oxfordreference.com/view/10.1093/oi/authority.20110803100415939?rskey=tF1NrR&result=2 oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 cell Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 Dark period Resp O2/cell [fmol/#/h] (Dark period) Respiration rate, oxygen, per cell Resp O2/cell fmol/#/h respiration rate http://www.oxfordreference.com/view/10.1093/oi/authority.20110803100415939?rskey=tF1NrR&result=2 oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 cell Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 Light period Resp O2/cell [fmol/#/h] (Light period) Net photosynthesis rate, oxygen, per cell PN O2/cell fmol/#/h net photosynthesis rate oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 cell Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 PN O2/cell [fmol/#/h] Gross photosynthesis rate, oxygen, per cell PG O2/cell pmol/#/h gross photosynthesis rate oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 cell Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 PG O2/cell [pmol/#/h] Gene abundance GA # Abundance or Count Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 upregulated differential expression genes (DEGs) GA [#] (upregulated differential expr...) Gene abundance GA # Abundance or Count Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 downregulated differential expression genes (DEGs) GA [#] (downregulated differential ex...) pH, total scale pHT Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 light pHT (light) Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 light AT [µmol/kg] (light) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 light pCO2water_SST_wet [µatm] (light, Calculated using CO2SYS) Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 light DIC [µmol/kg] (light, Calculated using CO2SYS) Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 light [HCO3]- [µmol/kg] (light, Calculated using CO2SYS) Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 light [CO3]2- [µmol/kg] (light, Calculated using CO2SYS) Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 light CO2 [µmol/kg] (light, Calculated using CO2SYS) Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 light CSC flag (light, Calculated using seaca...) Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 light CO2 [µmol/kg] (light, Calculated using seaca...) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 light fCO2water_SST_wet [µatm] (light, Calculated using seaca...) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 light pCO2water_SST_wet [µatm] (light, Calculated using seaca...) Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 light [HCO3]- [µmol/kg] (light, Calculated using seaca...) Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 light [CO3]2- [µmol/kg] (light, Calculated using seaca...) Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 light DIC [µmol/kg] (light, Calculated using seaca...) Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 light Omega Arg (light, Calculated using seaca...) Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 light Omega Cal (light, Calculated using seaca...) pH, total scale pHT Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 dark pHT (dark) Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 dark AT [µmol/kg] (dark) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 dark pCO2water_SST_wet [µatm] (dark, Calculated using CO2SYS) Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 dark DIC [µmol/kg] (dark, Calculated using CO2SYS) Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 dark [HCO3]- [µmol/kg] (dark, Calculated using CO2SYS) Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 dark [CO3]2- [µmol/kg] (dark, Calculated using CO2SYS) Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using CO2SYS Gao Guang gaog@hhit.edu.cn 0000-0002-9011-9640 dark CO2 [µmol/kg] (dark, Calculated using CO2SYS) Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 dark CSC flag (dark, Calculated using seacar...) Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 dark CO2 [µmol/kg] (dark, Calculated using seacar...) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 dark fCO2water_SST_wet [µatm] (dark, Calculated using seacar...) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 dark pCO2water_SST_wet [µatm] (dark, Calculated using seacar...) Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 dark [HCO3]- [µmol/kg] (dark, Calculated using seacar...) Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 dark [CO3]2- [µmol/kg] (dark, Calculated using seacar...) Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 dark DIC [µmol/kg] (dark, Calculated using seacar...) Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 dark Omega Arg (dark, Calculated using seacar...) Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 dark Omega Cal (dark, Calculated using seacar...) CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels Bottles or small containers/Aquaria (<20 L) Chromista Gene expression (incl. proteomics) Growth/Morphology Heterokontophyta Laboratory experiment Laboratory strains Light Not applicable Ocean acidification Pelagos Phytoplankton Primary production/Photosynthesis Respiration Single species Thalassiosira weissflogii author10403 author10414 author107699 author107700 author118126 author21564 author22144 author22148 author22159 author22414 author22445 author24922 author27217 author28754 author29138 author29176 author32865 author34379 author35310 author39204 author48750 author49255 author51658 author55788 author56746 author59171 author59172 author59173 author69140 author72306 curlevel30 inst20253 inst20262 inst22039 inst22854 journal16590 journal16832 license21 method6426 method6506 param128289 param131580 param131752 param185520 param190103 param46454 param49312 param49313 param510679 param534369 param54293 param54294 param80114 param82111 param82364 param82365 param82366 param87073 param96278 param98026 pi48750 pi49255 project4173 ref124625 ref128879 ref140385 ref140476 ref31273 ref79258 term1073490 term1073493 term1073966 term2606205 term37602 term37648 term38253 term38477 term38494 term38495 term38496 term38497 term38841 term38844 term38858 term38860 term38871 term38887 term38889 term38895 term39425 term40551 term40646 term41013 term43250 term43298 term43821 term43834 term43838 term43995 term44025 term44030 term48166 term49384 term49506 term50714 term73928 term74199