Simone Michelle N michelle.simone@auckland.ac.nz University of Auckland https://ror.org/03b94tp07 Southern Cross University SCU https://ror.org/001xkv632 Oakes Joanne M 0000-0002-9287-2652 Southern Cross University SCU https://ror.org/001xkv632 Schulz Kai Georg kai.schulz@scu.edu.au 0000-0002-8481-4639 Southern Cross University SCU https://ror.org/001xkv632 Eyre Bradley D 0000-0001-5502-0680 Southern Cross University SCU https://ror.org/001xkv632 2026 Seawater carbonate chemistry and estuarine benthic greenhouse gas fluxes dataset https://doi.pangaea.de/10.1594/PANGAEA.995630 2026-06-22T06:41:45 Here, we use a fully factorial laboratory experiment to disentangle how diel light–dark and tidal inundation and exposure interact with warming and elevated pCO2 to regulate benthic fluxes of CO2, CH4, and N2O in estuarine sediments, alongside concurrent changes in benthic oxygen exchange. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Zenodo (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-06-18. Simone Michelle mnhsimone@gmail.com 0000-0002-6309-3780 Oakes Joanne 0000-0002-9287-2652 Schulz Kai Georg kai.schulz@scu.edu.au 0000-0002-8481-4639 Eyre Bradley D 0000-0001-5502-0680 2026 Light and tidal inundation and exposure regulate the sensitivity of estuarine benthic greenhouse gas fluxes to warming and ocean acidification journal article Limnology and Oceanography 71(4) https://doi.org/10.1002/lno.70362 e70362 Simone Michelle mnhsimone@gmail.com 0000-0002-6309-3780 2026 Data: Light and tidal inundation and exposure regulate the sensitivity of estuarine benthic greenhouse gas fluxes to warming and ocean acidification dataset Zenodo https://doi.org/10.5281/ZENODO.15851434 Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be 0009-0006-6766-0638 Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html 153.324 153.324 -29.4035 -29.4035 153.324 -29.4035 OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 Clarence_River_Estuary -29.4035 153.324 784 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Simone Michelle N michelle.simone@auckland.ac.nz Study type Treatment Treat treatment Simone Michelle N michelle.simone@auckland.ac.nz Treat Salinity Sal salinity http://purl.obolibrary.org/obo/PATO_0085001 Simone Michelle N michelle.simone@auckland.ac.nz Sal Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Simone Michelle N michelle.simone@auckland.ac.nz Temp [°C] Respiration rate, oxygen Resp O2 mmol/m**2/h respiration rate http://www.oxfordreference.com/view/10.1093/oi/authority.20110803100415939?rskey=tF1NrR&result=2 oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Resp O2 [mmol/m**2/h] Net primary production of oxygen NPP O2 mmol/m**2/h net primary production oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz NPP O2 [mmol/m**2/h] Methane, flux CH4 flux µmol/m**2/h methane http://purl.obolibrary.org/obo/CHEBI_16183 flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Light Inundated CH4 flux [µmol/m**2/h] (Light Inundated) Methane, flux CH4 flux µmol/m**2/h methane http://purl.obolibrary.org/obo/CHEBI_16183 flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Dark Inundated CH4 flux [µmol/m**2/h] (Dark Inundated) Methane, flux CH4 flux µmol/m**2/h methane http://purl.obolibrary.org/obo/CHEBI_16183 flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Light Exposed CH4 flux [µmol/m**2/h] (Light Exposed) Methane, flux CH4 flux µmol/m**2/h methane http://purl.obolibrary.org/obo/CHEBI_16183 flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Dark Exposed CH4 flux [µmol/m**2/h] (Dark Exposed) Nitrous oxide, flux N2O flux nmol/m**2/h nitrous oxide flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Light Inundated N2O flux [nmol/m**2/h] (Light Inundated) Nitrous oxide, flux N2O flux nmol/m**2/h nitrous oxide flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Dark Inundated N2O flux [nmol/m**2/h] (Dark Inundated) Nitrous oxide, flux N2O flux nmol/m**2/h nitrous oxide flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Light Exposed N2O flux [nmol/m**2/h] (Light Exposed) Nitrous oxide, flux N2O flux nmol/m**2/h nitrous oxide flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Dark Exposed N2O flux [nmol/m**2/h] (Dark Exposed) Carbon dioxide, flux CO2 flux µmol/m**2/h carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Light Inundated CO2 flux [µmol/m**2/h] (Light Inundated) Carbon dioxide, flux CO2 flux µmol/m**2/h carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Dark Inundated CO2 flux [µmol/m**2/h] (Dark Inundated) Carbon dioxide, flux CO2 flux µmol/m**2/h carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Light Exposed CO2 flux [µmol/m**2/h] (Light Exposed) Carbon dioxide, flux CO2 flux µmol/m**2/h carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 flux http://purl.obolibrary.org/obo/PATO_0001030 Molar Flux Simone Michelle N michelle.simone@auckland.ac.nz Dark Exposed CO2 flux [µmol/m**2/h] (Dark Exposed) Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Simone Michelle N michelle.simone@auckland.ac.nz Temp [°C] Temperature, water, standard deviation Temp std dev ± Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Simone Michelle N michelle.simone@auckland.ac.nz Temp std dev [±] pH, total scale pHT Calculated using CO2SYS Simone Michelle N michelle.simone@auckland.ac.nz pHT (Calculated using CO2SYS) pH, standard deviation pH std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using CO2SYS Simone Michelle N michelle.simone@auckland.ac.nz total scale pH std dev [±] (total scale, Calculated using...) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using CO2SYS Simone Michelle N michelle.simone@auckland.ac.nz pCO2water_SST_wet [µatm] (Calculated using CO2SYS) Partial pressure of carbon dioxide, standard deviation pCO2 std dev ± partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using CO2SYS Simone Michelle N michelle.simone@auckland.ac.nz pCO2 std dev [±] (Calculated using CO2SYS) Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using CO2SYS Simone Michelle N michelle.simone@auckland.ac.nz [HCO3]- [µmol/kg] (Calculated using CO2SYS) Bicarbonate ion, standard deviation [HCO3]- std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using CO2SYS Simone Michelle N michelle.simone@auckland.ac.nz [HCO3]- std dev [±] (Calculated using CO2SYS) Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using CO2SYS Simone Michelle N michelle.simone@auckland.ac.nz [CO3]2- [µmol/kg] (Calculated using CO2SYS) Carbonate ion, standard deviation [CO3]2- std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using CO2SYS Simone Michelle N michelle.simone@auckland.ac.nz [CO3]2- std dev [±] (Calculated using CO2SYS) Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Simone Michelle N michelle.simone@auckland.ac.nz AT [µmol/kg] Alkalinity, total, standard deviation AT std dev ± total https://www.oxforddictionaries.com/definition/american_english/total standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Simone Michelle N michelle.simone@auckland.ac.nz AT std dev [±] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Simone Michelle N michelle.simone@auckland.ac.nz DIC [µmol/kg] Carbon, inorganic, dissolved, standard deviation DIC std dev ± carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Simone Michelle N michelle.simone@auckland.ac.nz DIC std dev [±] Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CSC flag (Calculated using seacarb afte...) pH, total scale pHT Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pHT (Calculated using seacarb afte...) pH, standard deviation pH std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 total scale pH std dev [±] (total scale, Calculated using...) Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 [µmol/kg] (Calculated using seacarb afte...) Carbon dioxide, standard deviation CO2 std dev ± carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using seacarb after Orr et al. (2018) https://www.sciencedirect.com/science/article/pii/S030442031830149X?via%3Dihub Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 std dev [±] (Calculated using seacarb afte...) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...) Fugacity of carbon dioxide in seawater, standard deviation fCO2 std dev ± fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 seawater standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using seacarb after Orr et al. (2018) https://www.sciencedirect.com/science/article/pii/S030442031830149X?via%3Dihub Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2 std dev [±] (Calculated using seacarb afte...) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...) Partial pressure of carbon dioxide, standard deviation pCO2 std dev ± partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using seacarb after Orr et al. (2018) https://www.sciencedirect.com/science/article/pii/S030442031830149X?via%3Dihub Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2 std dev [±] (Calculated using seacarb afte...) Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- [µmol/kg] (Calculated using seacarb afte...) Bicarbonate ion, standard deviation [HCO3]- std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using seacarb after Orr et al. (2018) https://www.sciencedirect.com/science/article/pii/S030442031830149X?via%3Dihub Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- std dev [±] (Calculated using seacarb afte...) Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- [µmol/kg] (Calculated using seacarb afte...) Carbonate ion, standard deviation [CO3]2- std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using seacarb after Orr et al. (2018) https://www.sciencedirect.com/science/article/pii/S030442031830149X?via%3Dihub Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- std dev [±] (Calculated using seacarb afte...) Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg (Calculated using seacarb afte...) Aragonite saturation state, standard deviation Omega Arg std dev ± aragonite saturation state standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using seacarb after Orr et al. (2018) https://www.sciencedirect.com/science/article/pii/S030442031830149X?via%3Dihub Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg std dev [±] (Calculated using seacarb afte...) Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal (Calculated using seacarb afte...) Calcite saturation state, standard deviation Omega Cal std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Calculated using seacarb after Orr et al. (2018) https://www.sciencedirect.com/science/article/pii/S030442031830149X?via%3Dihub Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal std dev [±] (Calculated using seacarb afte...) CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels Benthos Brackish waters Containers and aquaria (20-1000 L or < 1 m**2) Entire community Laboratory experiment Light Ocean acidification Other Other studied parameter or process Primary production/Photosynthesis Respiration Soft-bottom community South Pacific Temperate Temperature author103419 author10403 author10414 author107699 author107700 author118121 author21564 author22144 author22148 author22159 author22414 author22445 author24922 author27217 author28754 author29138 author29176 author31739 author32865 author34379 author39204 author48750 author51658 author52184 author55788 author56746 author59171 author59172 author59173 author69140 author78592 author78594 curlevel30 event3413417 geocode1600 geocode1601 inst20253 inst21227 inst21706 journal10608 journal16590 license21 method10287 method6426 method6506 param123368 param125247 param150944 param160690 param185520 param26954 param49312 param49313 param5125 param527603 param527605 param534369 param54293 param54294 param565376 param716 param717 param80114 param82111 param82364 param82365 param82366 param83476 param87073 param87459 param87460 param87461 param87463 param87464 param93278 param96278 pi118121 pi48750 project4173 ref124625 ref128879 ref140376 ref140377 ref31273 ref79258 term1073490 term1073493 term1073540 term1073620 term2606205 term2698012 term37599 term37602 term37648 term37764 term38253 term38477 term38494 term38497 term38841 term38845 term38850 term38855 term38857 term38859 term38862 term38889 term38901 term39424 term40464 term40646 term41013 term41042 term41062 term43298 term43821 term43834 term43972 term44001 term44029 term44030 term48166 term49506 term73928