/* DATA DESCRIPTION: Citation: Unzueta-Martínez, Andrea; Delaney, Jennifer A; Morkeski, K; Ross, Abby; Wang, Zhaohui Aleck; Girguis, Peter R (2026): Seawater carbonate chemistry and calcifying fluid chemistry of Crassostrea virginica [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.995588 Abstract: To better understand oysters' molecular mechanisms and the role of their calcifying-fluid microbes, we conducted experiments that simulated a tidal cycle, measured calcifying fluid pH and total dissolved inorganic carbon, and characterized host and microbial gene expression via transcriptomics. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-06-18. Keyword(s): Acid-base regulation; Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea virginica; Entire community; Laboratory experiment; Mollusca; North Atlantic; Ocean acidification; Single species; Temperate Related to: Unzueta-Martínez, Andrea; Delaney, Jennifer A; Morkeski, K; Ross, Abby; Wang, Zhaohui Aleck; Girguis, Peter R (2026): Coexpression among eastern oyster host and microbiome genes suggests coordinated regulation of calcifying fluid chemistry. Proceedings of the National Academy of Sciences of the United States of America, 123(11), e2521539123, https://doi.org/10.1073/pnas.2521539123 References: Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010 Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024 Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016 Related code / software: Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html Further details: GitHub - Andrea-Unzueta-Martinez/oyster-host-microbiome-transcriptomics: Count matrices and scripts for oyster host and microbiome transcriptomic analyses. · GitHub [webpage]. https://github.com/Andrea-Unzueta-Martinez/oyster-host-microbiome-transcriptomics Project(s): Ocean Acidification International Coordination Centre (OA-ICC) (URI: https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management) Coverage: LATITUDE: 41.710400 * LONGITUDE: -70.305100 Event(s): Barnstable_OA * LATITUDE: 41.710400 * LONGITUDE: -70.305100 * METHOD/DEVICE: Experiment (EXP) Parameter(s): Type of study (Study type) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Species, unique identification (Species UID) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Treatment (Treat) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Local Time (Local time) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Replicates [#] (Repl) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Salinity (Sal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Salinity, standard deviation [±] (Sal std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Salinity (Sal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: min Salinity (Sal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: max Temperature, water [°C] (Temp) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Temperature, water, standard deviation [±] (Temp std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Temperature, water [°C] (Temp) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: min Temperature, water [°C] (Temp) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: max pH, NBS scale (pH NBS) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Potentiometric pH, standard deviation [±] (pH std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Potentiometric * COMMENT: NBS scale pH, NBS scale (pH NBS) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Potentiometric * COMMENT: min pH, NBS scale (pH NBS) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Potentiometric * COMMENT: max Carbon, inorganic, dissolved [µmol/kg] (DIC) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Carbon, inorganic, dissolved, standard deviation [±] (DIC std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Carbon, inorganic, dissolved [µmol/kg] (DIC) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: min Carbon, inorganic, dissolved [µmol/kg] (DIC) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: max Alkalinity, total [µmol/kg] (AT) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Alkalinity, total, standard deviation [±] (AT std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Alkalinity, total [µmol/kg] (AT) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Alkalinity, total [µmol/kg] (AT) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) [ppmv] (pCO2water_SST_wet) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Partial pressure of carbon dioxide, standard deviation [±] (pCO2 std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) [ppmv] (pCO2water_SST_wet) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) [ppmv] (pCO2water_SST_wet) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Carbonate ion [µmol/kg] ([CO3]2-) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Carbonate ion, standard deviation [±] ([CO3]2- std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Carbonate ion [µmol/kg] ([CO3]2-) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Carbonate ion [µmol/kg] ([CO3]2-) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Bicarbonate ion [µmol/kg] ([HCO3]-) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Bicarbonate ion, standard deviation [±] ([HCO3]- std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Bicarbonate ion [µmol/kg] ([HCO3]-) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Bicarbonate ion [µmol/kg] ([HCO3]-) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Carbon dioxide [µmol/kg] (CO2) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Carbon dioxide, standard deviation [±] (CO2 std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Carbon dioxide [µmol/kg] (CO2) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Carbon dioxide [µmol/kg] (CO2) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Calcite saturation state (Omega Cal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcite saturation state, standard deviation [±] (Omega Cal std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcite saturation state (Omega Cal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Calcite saturation state (Omega Cal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Aragonite saturation state (Omega Arg) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Aragonite saturation state, standard deviation [±] (Omega Arg std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Aragonite saturation state (Omega Arg) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Aragonite saturation state (Omega Arg) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Salinity (Sal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: calcifying fluid Salinity, standard deviation [±] (Sal std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: calcifying fluid Salinity (Sal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: min, calcifying fluid Salinity (Sal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: max, calcifying fluid Temperature, water [°C] (Temp) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: calcifying fluid Temperature, water, standard deviation [±] (Temp std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: calcifying fluid Temperature, water [°C] (Temp) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: min, calcifying fluid Temperature, water [°C] (Temp) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: max, calcifying fluid Calcifying fluid, pH (CF pH) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Potentiometric * COMMENT: NBS scale Calcifying fluid, pH, standard deviation [±] (CF pH std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Potentiometric * COMMENT: NBS scale Calcifying fluid, pH (CF pH) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Potentiometric * COMMENT: min, NBS scale Calcifying fluid, pH (CF pH) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Potentiometric * COMMENT: max, NBS scale Calcifying fluid, dissolved inorganic carbon [µmol/kg] (CF DIC) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Calcifying fluid, dissolved inorganic carbon, standard deviation [±] (CF DIC std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) Calcifying fluid, dissolved inorganic carbon [µmol/kg] (CF DIC) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: min Calcifying fluid, dissolved inorganic carbon [µmol/kg] (CF DIC) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * COMMENT: max Calcifying fluid, total alkalinity [µmol/kg] (CF AT) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, total alkalinity, standard deviation [±] (CF AT std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, total alkalinity [µmol/kg] (CF AT) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Calcifying fluid, total alkalinity [µmol/kg] (CF AT) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Calcifying fluid, partial pressure of carbon dioxide [ppmv] (CF pCO2) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, partial pressure of carbon dioxide, standard deviation [±] (CF pCO2 std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, partial pressure of carbon dioxide [ppmv] (CF pCO2) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Calcifying fluid, partial pressure of carbon dioxide [ppmv] (CF pCO2) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Calcifying fluid, carbonate ion [µmol/kg] (CF [CO3]2-) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, carbonate ion, standard deviation [±] (CF [CO3]2- std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, carbonate ion [µmol/kg] (CF [CO3]2-) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Calcifying fluid, carbonate ion [µmol/kg] (CF [CO3]2-) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Calcifying fluid, bicarbonate ion [µmol/kg] (CF HCO3) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, bicarbonate ion, standard deviation [±] (CF HCO3 std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, bicarbonate ion [µmol/kg] (CF HCO3) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Calcifying fluid, bicarbonate ion [µmol/kg] (CF HCO3) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Calcifying fluid, carbon dioxide [µmol/kg] (CF CO2) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, carbon dioxide, standard deviation [±] (CF CO2 std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, carbon dioxide [µmol/kg] (CF CO2) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Calcifying fluid, carbon dioxide [µmol/kg] (CF CO2) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Calcifying fluid, calcite saturation state (CF Omega Cal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, calcite saturation state, standard deviation [±] (CF Omega Cal (cf) std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, calcite saturation state (CF Omega Cal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Calcifying fluid, calcite saturation state (CF Omega Cal) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Calcifying fluid, aragonite saturation state (CF Omega Arg) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, aragonite saturation state, standard deviation [±] (CF Omega Arg std dev) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R Calcifying fluid, aragonite saturation state (CF Omega Arg) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: min Calcifying fluid, aragonite saturation state (CF Omega Arg) * PI: Unzueta-Martínez, Andrea (andrea_unzuetamartinez@fas.harvard.edu) * METHOD/DEVICE: Calculated with seacarb package in R * COMMENT: max Carbonate system computation flag (CSC flag) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) pH, total scale (pHT) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Carbon dioxide [µmol/kg] (CO2) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) [µatm] (fCO2water_SST_wet) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) [µatm] (pCO2water_SST_wet) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Bicarbonate ion [µmol/kg] ([HCO3]-) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Carbonate ion [µmol/kg] ([CO3]2-) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Carbon, inorganic, dissolved [µmol/kg] (DIC) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Aragonite saturation state (Omega Arg) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Calcite saturation state (Omega Cal) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) License: Creative Commons Attribution 4.0 International (CC-BY-4.0) (URI: https://creativecommons.org/licenses/by/4.0/) Status: Curation Level: Enhanced curation (URI: https://wiki.pangaea.de/wiki/Curation_levels) Size: 1030 data points */ Study type Species UID Treat Local time Repl [#] Sal Sal std dev [±] Sal (min) Sal (max) Temp [°C] Temp std dev [±] Temp [°C] (min) Temp [°C] (max) pH NBS (Potentiometric) pH std dev [±] (NBS scale, Potentiometric) pH NBS (min, Potentiometric) pH NBS (max, Potentiometric) DIC [µmol/kg] DIC std dev [±] DIC [µmol/kg] (min) DIC [µmol/kg] (max) AT [µmol/kg] (Calculated with seacarb packa...) AT std dev [±] (Calculated with seacarb packa...) AT [µmol/kg] (min, Calculated with seacarb ...) AT [µmol/kg] (max, Calculated with seacarb ...) pCO2water_SST_wet [ppmv] (Calculated with seacarb packa...) pCO2 std dev [±] (Calculated with seacarb packa...) pCO2water_SST_wet [ppmv] (min, Calculated with seacarb ...) pCO2water_SST_wet [ppmv] (max, Calculated with seacarb ...) [CO3]2- [µmol/kg] (Calculated with seacarb packa...) [CO3]2- std dev [±] (Calculated with seacarb packa...) [CO3]2- [µmol/kg] (min, Calculated with seacarb ...) [CO3]2- [µmol/kg] (max, Calculated with seacarb ...) [HCO3]- [µmol/kg] (Calculated with seacarb packa...) [HCO3]- std dev [±] (Calculated with seacarb packa...) [HCO3]- [µmol/kg] (min, Calculated with seacarb ...) [HCO3]- [µmol/kg] (max, Calculated with seacarb ...) CO2 [µmol/kg] (Calculated with seacarb packa...) CO2 std dev [±] (Calculated with seacarb packa...) CO2 [µmol/kg] (min, Calculated with seacarb ...) CO2 [µmol/kg] (max, Calculated with seacarb ...) Omega Cal (Calculated with seacarb packa...) Omega Cal std dev [±] (Calculated with seacarb packa...) Omega Cal (min, Calculated with seacarb ...) Omega Cal (max, Calculated with seacarb ...) Omega Arg (Calculated with seacarb packa...) Omega Arg std dev [±] (Calculated with seacarb packa...) Omega Arg (min, Calculated with seacarb ...) Omega Arg (max, Calculated with seacarb ...) Sal (calcifying fluid) Sal std dev [±] (calcifying fluid) Sal (min, calcifying fluid) Sal (max, calcifying fluid) Temp [°C] (calcifying fluid) Temp std dev [±] (calcifying fluid) Temp [°C] (min, calcifying fluid) Temp [°C] (max, calcifying fluid) CF pH (NBS scale, Potentiometric) CF pH std dev [±] (NBS scale, Potentiometric) CF pH (min, NBS scale, Potentiometric) CF pH (max, NBS scale, Potentiometric) CF DIC [µmol/kg] CF DIC std dev [±] CF DIC [µmol/kg] (min) CF DIC [µmol/kg] (max) CF AT [µmol/kg] (Calculated with seacarb packa...) CF AT std dev [±] (Calculated with seacarb packa...) CF AT [µmol/kg] (min, Calculated with seacarb ...) CF AT [µmol/kg] (max, Calculated with seacarb ...) CF pCO2 [ppmv] (Calculated with seacarb packa...) CF pCO2 std dev [±] (Calculated with seacarb packa...) CF pCO2 [ppmv] (min, Calculated with seacarb ...) CF pCO2 [ppmv] (max, Calculated with seacarb ...) CF [CO3]2- [µmol/kg] (Calculated with seacarb packa...) CF [CO3]2- std dev [±] (Calculated with seacarb packa...) CF [CO3]2- [µmol/kg] (min, Calculated with seacarb ...) CF [CO3]2- [µmol/kg] (max, Calculated with seacarb ...) CF HCO3 [µmol/kg] (Calculated with seacarb packa...) CF HCO3 std dev [±] (Calculated with seacarb packa...) CF HCO3 [µmol/kg] (min, Calculated with seacarb ...) CF HCO3 [µmol/kg] (max, Calculated with seacarb ...) CF CO2 [µmol/kg] (Calculated with seacarb packa...) CF CO2 std dev [±] (Calculated with seacarb packa...) CF CO2 [µmol/kg] (min, Calculated with seacarb ...) CF CO2 [µmol/kg] (max, Calculated with seacarb ...) CF Omega Cal (Calculated with seacarb packa...) CF Omega Cal (cf) std dev [±] (Calculated with seacarb packa...) CF Omega Cal (min, Calculated with seacarb ...) CF Omega Cal (max, Calculated with seacarb ...) CF Omega Arg (Calculated with seacarb packa...) CF Omega Arg std dev [±] (Calculated with seacarb packa...) CF Omega Arg (min, Calculated with seacarb ...) CF Omega Arg (max, Calculated with seacarb ...) CSC flag (Calculated using seacarb afte...) pHT (Calculated using seacarb afte...) CO2 [µmol/kg] (Calculated using seacarb afte...) fCO2water_SST_wet [µatm] (Calculated using seacarb afte...) pCO2water_SST_wet [µatm] (Calculated using seacarb afte...) [HCO3]- [µmol/kg] (Calculated using seacarb afte...) [CO3]2- [µmol/kg] (Calculated using seacarb afte...) DIC [µmol/kg] (Calculated using seacarb afte...) Omega Arg (Calculated using seacarb afte...) Omega Cal (Calculated using seacarb afte...) laboratory Crassostrea virginica Control treatment seawater 06:25:00 4 35.16 1.12 34.6 36.2 18.40 0.12 18.1 18.4 7.83 0.03 7.79 7.86 2034.17 109.02 1873 2110 2040.59 95.00 1904 2110 640.15 70.97 540 704 109.01 5.81 100.0 113.0 1766.06 100.31 1617 1834 21.76 2.59 18.10 24.10 2.60 0.13 2.40 2.70 1.68 0.09 1.50 1.70 16.91 0.38 16.4 17.2 24.83 1.45 22.6 25.7 6.87 0.26 6.61 7.23 4247.06 454.18 3858 4848 3764.87 231.22 3469 4017 16278.53 8829.57 6105 27662 22.03 14.47 11.9 43.5 3717.51 239.63 3436 3992 507.52 268.27 188 844 0.61 0.41 0.33 1.22 0.37 0.25 0.20 0.74 27 7.71 30.21 892.13 895.23 1920.55 83.44 2129.90 1.29 1.99 laboratory Crassostrea virginica Control treatment seawater 09:37:00 4 34.80 0.17 34.5 34.9 17.70 0.30 17.3 18.0 7.74 0.03 7.70 7.77 2003.07 130.05 1814 2111 1900.76 125.60 1793 2046 750.28 70.20 687 842 81.39 8.14 71.6 89.3 1692.88 110.99 1596 1828 26.17 2.14 24.16 28.90 1.95 0.20 1.71 2.14 1.26 0.13 1.10 1.40 16.53 0.17 20.9 27.0 25.95 0.38 25.4 26.4 7.32 0.10 7.17 7.40 3938.23 833.45 3198 5026 3764.87 231.22 3469 4017 5308.37 1660.11 3476 7434 56.43 18.35 42.0 82.7 3720.34 790.29 3037 4771 161.46 50.80 105 225 1.58 0.51 1.17 2.31 0.96 0.31 0.72 1.41 27 7.62 37.39 1080.05 1083.83 1900.74 64.96 2064.70 1.00 1.55 laboratory Crassostrea virginica Control treatment seawater 12:50:00 4 34.71 0.06 34.6 34.7 17.60 0.30 17.2 18.0 7.65 0.04 7.61 7.69 1928.65 102.32 1814 2051 1941.21 117.85 1767 2031 968.25 142.16 823 1128 69.44 5.62 65.4 77.8 1764.83 115.87 1598 1863 33.56 4.69 28.80 38.80 1.66 0.13 1.54 1.86 1.07 0.09 1.00 1.20 16.69 0.19 16.6 16.9 25.03 0.29 24.6 25.3 7.21 0.06 7.16 7.26 3669.84 552.90 3195 4468 3525.18 516.99 3049 4259 6117.60 1401.53 5148 8159 39.27 5.92 30.5 43.5 3440.11 510.31 2982 4170 190.46 45.01 160 256 1.09 0.16 0.85 1.21 0.67 0.10 0.52 0.74 27 7.53 44.51 1281.26 1285.76 1833.55 50.64 1962.70 0.78 1.21 laboratory Crassostrea virginica Control treatment seawater 16:02:00 4 34.88 0.19 34.6 35.1 17.80 0.40 17.2 18.1 7.64 0.02 7.63 7.68 1896.28 31.04 1880 1942 1867.81 91.65 1769 1978 942.90 94.72 956 1039 65.37 1.95 62.5 66.7 1700.17 91.64 1597 1809 32.89 3.30 28.50 36.40 1.56 0.04 1.50 1.59 1.01 0.03 0.97 1.02 18.32 18.32 18.2 18.5 25.40 0.12 25.3 25.5 7.11 0.18 6.90 7.30 3926.99 888.90 3064 4699 3710.69 841.00 2811 4510 8501.91 3615.62 4252 13019 37.06 15.91 18.1 52.9 3630.42 825.58 2771 4397 259.51 109.73 130 396 1.02 0.44 0.49 1.46 0.63 0.27 0.31 0.89 27 7.52 44.52 1290.20 1294.72 1802.57 49.21 1928.60 0.76 1.18 laboratory Crassostrea virginica Control treatment seawater 19:14:00 4 34.93 0.12 34.7 35.0 17.70 0.30 17.2 18.1 7.65 0.02 7.62 7.68 1930.82 127.76 1821 2084 1840.65 27.83 1825 1882 907.46 49.79 842 958 66.09 2.46 63.6 69.3 1670.66 28.11 1649 1712 31.50 1.64 29.00 32.00 1.58 0.06 1.52 1.66 1.02 0.04 0.98 1.07 19.14 0.52 18.5 19.5 24.70 0.24 24.4 24.9 7.02 0.17 6.80 7.20 3415.04 746.54 2863 4517 3180.47 731.09 2663 42249 8597.17 2968.41 5233 11944 26.20 11.32 13.4 36.0 3122.93 714.18 2619 4171 265.91 90.31 162 367 0.71 0.31 0.36 0.99 0.44 0.19 0.22 0.61 27 7.53 44.32 1281.09 1285.59 1835.28 51.20 1965.90 0.79 1.22 laboratory Crassostrea virginica Tidal pH treatment seawater 06:25:00 4 33.96 1.74 31.3 34.9 18.06 0.50 17.5 18.7 7.87 0.01 7.86 7.88 2009.03 126.68 1891 2148 2068.61 127.72 1945 2209 592.62 42.83 543 637 143.82 9.25 134.0 154.0 1712.52 107.73 1613 1830 17.04 1.24 15.70 18.32 3.49 0.19 3.33 3.72 2.29 0.13 2.17 2.44 22.34 4.23 18.6 28.4 24.59 0.31 24.2 24.9 7.21 0.16 6.97 7.32 3219.66 816.87 2495 4230 3103.13 764.07 2445 4097 5477.89 2754.41 3125 8943 40.29 10.29 30.2 54.6 3013.27 752.03 2361 3979 166.12 80.18 97 265 1.07 0.29 0.76 1.47 0.67 0.18 0.49 0.92 27 7.75 27.70 804.77 807.57 1894.76 86.54 2111.40 1.34 2.08 laboratory Crassostrea virginica Tidal pH treatment seawater 09:37:00 4 32.24 4.23 25.8 34.5 17.38 0.15 17.3 17.6 7.24 0.10 7.11 7.35 2152.53 117.13 1995 2276 1860.59 97.15 1723 1952 2683.63 693.66 2457 3688 34.37 5.04 28.2 38.8 1774.88 99.92 1640 1881 77.05 19.51 62.20 106.00 0.85 0.14 0.68 0.99 0.55 0.09 0.44 0.63 22.39 3.12 20.9 27.0 24.95 0.24 24.6 25.1 7.30 0.17 7.07 7.44 3705.69 783.90 3187 4861 3633.92 807.62 3168 4839 4858.63 1715.56 3191 7260 62.97 28.59 36.0 102.5 3496.04 756.31 3026 4619 146.67 50.16 96 216 1.68 0.79 0.94 2.76 1.05 0.48 0.61 1.72 27 7.12 129.35 3649.60 3662.48 2003.17 19.98 2053.10 0.31 0.49 laboratory Crassostrea virginica Tidal pH treatment seawater 12:50:00 4 32.78 4.14 26.5 34.9 17.63 0.25 17.3 17.8 6.93 0.07 6.85 7.00 2194.43 75.89 2123 2295 1874.32 117.09 1714 1994 5586.42 781.35 4644 6554 17.87 4.35 12.9 22.6 1829.89 108.47 1682 1944 159.44 22.33 130.00 184.00 0.44 0.10 0.33 0.54 0.29 0.07 0.22 0.36 21.06 5.59 14.4 28.0 25.13 0.33 24.6 25.3 7.07 0.09 6.99 7.20 3372.45 347.20 3015 3785 3186.92 329.03 2835 3549 7317.20 1219.44 6102 8994 29.85 2.85 27.3 33.7 3120.91 325.89 2772 3483 221.71 35.09 191 272 0.81 0.12 0.69 0.96 0.50 0.06 0.45 0.58 27 6.81 252.04 7184.55 7209.94 1932.70 9.66 1957.00 0.15 0.23 laboratory Crassostrea virginica Tidal pH treatment seawater 16:02:00 4 32.72 4.16 26.4 35.0 17.50 0.33 17.1 17.8 7.48 0.04 7.42 7.52 2050.75 113.44 1981 2218 2094.04 78.92 2030 2203 1655.97 116.54 1557 1824 65.65 6.81 59.5 75.3 1933.37 66.51 1869 2018 47.25 2.75 45.70 51.40 1.61 0.15 1.44 1.81 1.05 0.10 0.95 1.19 22.54 3.53 19.7 27.1 25.13 0.35 24.6 25.3 7.14 0.20 6.87 7.30 6081.90 1260.13 4463 6846 5816.85 1307.94 4272 7108 11524.54 4739.00 8474 18594 72.75 35.61 34.1 108.0 5662.81 1245.21 4159 6881 346.33 139.85 252 554 1.95 0.99 0.89 2.94 1.22 0.61 0.57 1.82 27 7.36 71.65 2034.08 2041.24 1944.84 34.31 2031.00 0.54 0.83 laboratory Crassostrea virginica Tidal pH treatment seawater 19:14:00 4 32.74 4.04 26.6 34.8 18.12 0.22 17.8 18.3 7.65 0.07 7.61 7.75 2022.88 119.68 1869 2161 2013.93 110.16 1941 2176 1032.72 148.20 825 1173 89.44 6.40 82.9 96.5 1793.17 98.54 1733 1939 29.68 3.52 24.80 33.20 2.19 0.19 2.00 2.38 1.43 0.11 1.32 1.53 22.55 3.48 19.7 27.6 24.75 0.34 24.3 25.0 7.45 0.16 7.31 7.65 3660.59 401.24 3361 4225 3658.74 411.19 3318 4245 3473.52 1108.50 1935 4386 86.54 30.29 51.7 116.0 3468.65 386.63 3185 4015 105.41 33.12 59 130 2.30 0.82 1.39 3.11 1.44 0.51 0.86 1.95 27 7.53 47.38 1369.61 1374.39 1924.22 51.30 2052.70 0.80 1.24