de.pangaea.dataset995588 und dataset PANGAEA

info@pangaea.de

https://www.pangaea.de/ information pointOfContact 2026-07-17T03:27:08Z https://doi.pangaea.de/10.1594/PANGAEA.995588 2026-06-18T08:38:55 publication https://doi.org/10.1594/PANGAEA.995588 Unzueta-Martínez, Andrea

andrea_unzuetamartinez@fas.harvard.edu

author Delaney, Jennifer A author Morkeski, K author Ross, Abby author Wang, Zhaohui Aleck https://orcid.org/0000-0002-0540-662X information author Girguis, Peter R https://orcid.org/0000-0002-3599-8160 information author PANGAEA

info@pangaea.de

https://www.pangaea.de/ information publisher tableDigital To better understand oysters' molecular mechanisms and the role of their calcifying-fluid microbes, we conducted experiments that simulated a tidal cycle, measured calcifying fluid pH and total dissolved inorganic carbon, and characterized host and microbial gene expression via transcriptomics. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-06-18. completed Unzueta-Martínez, Andrea

andrea_unzuetamartinez@fas.harvard.edu

principalInvestigator Yang, Yan

yangyan@xmu.edu.cn

https://orcid.org/0000-0003-4900-5606 information principalInvestigator Acid-base regulation Animalia Benthic animals Benthos Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Crassostrea virginica Entire community Laboratory experiment Mollusca North Atlantic Ocean acidification Single species Temperate theme 1995-01-01 creation PANGAEA

info@pangaea.de

https://www.pangaea.de/ information pointOfContact OA-ICC Ocean Acidification International Coordination Centre theme 1995-01-01 creation PANGAEA

info@pangaea.de

https://www.pangaea.de/ information pointOfContact copyright copyright CC-BY-4.0: Creative Commons Attribution 4.0 International textTable und geoscientificInformation -70.3051 -70.3051 41.7104 41.7104 Type of study thematicClassification Species, unique identification thematicClassification Treatment thematicClassification Local Time thematicClassification Replicates physicalMeasurement # # Salinity thematicClassification Salinity, standard deviation physicalMeasurement ± ± Salinity thematicClassification min Salinity thematicClassification max Temperature, water physicalMeasurement °C °C Temperature, water, standard deviation physicalMeasurement ± ± Temperature, water physicalMeasurement min °C °C Temperature, water physicalMeasurement max °C °C pH, NBS scale thematicClassification Potentiometric pH, standard deviation physicalMeasurement Potentiometric; NBS scale ± ± pH, NBS scale thematicClassification Potentiometric; min pH, NBS scale thematicClassification Potentiometric; max Carbon, inorganic, dissolved physicalMeasurement µmol/kg µmol/kg Carbon, inorganic, dissolved, standard deviation physicalMeasurement ± ± Carbon, inorganic, dissolved physicalMeasurement min µmol/kg µmol/kg Carbon, inorganic, dissolved physicalMeasurement max µmol/kg µmol/kg Alkalinity, total physicalMeasurement Calculated with seacarb package in R µmol/kg µmol/kg Alkalinity, total, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Alkalinity, total physicalMeasurement Calculated with seacarb package in R; min µmol/kg µmol/kg Alkalinity, total physicalMeasurement Calculated with seacarb package in R; max µmol/kg µmol/kg Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement Calculated with seacarb package in R ppmv ppmv Partial pressure of carbon dioxide, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement Calculated with seacarb package in R; min ppmv ppmv Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement Calculated with seacarb package in R; max ppmv ppmv Carbonate ion physicalMeasurement Calculated with seacarb package in R µmol/kg µmol/kg Carbonate ion, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Carbonate ion physicalMeasurement Calculated with seacarb package in R; min µmol/kg µmol/kg Carbonate ion physicalMeasurement Calculated with seacarb package in R; max µmol/kg µmol/kg Bicarbonate ion physicalMeasurement Calculated with seacarb package in R µmol/kg µmol/kg Bicarbonate ion, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Bicarbonate ion physicalMeasurement Calculated with seacarb package in R; min µmol/kg µmol/kg Bicarbonate ion physicalMeasurement Calculated with seacarb package in R; max µmol/kg µmol/kg Carbon dioxide physicalMeasurement Calculated with seacarb package in R µmol/kg µmol/kg Carbon dioxide, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Carbon dioxide physicalMeasurement Calculated with seacarb package in R; min µmol/kg µmol/kg Carbon dioxide physicalMeasurement Calculated with seacarb package in R; max µmol/kg µmol/kg Calcite saturation state thematicClassification Calculated with seacarb package in R Calcite saturation state, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Calcite saturation state thematicClassification Calculated with seacarb package in R; min Calcite saturation state thematicClassification Calculated with seacarb package in R; max Aragonite saturation state thematicClassification Calculated with seacarb package in R Aragonite saturation state, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Aragonite saturation state thematicClassification Calculated with seacarb package in R; min Aragonite saturation state thematicClassification Calculated with seacarb package in R; max Salinity thematicClassification calcifying fluid Salinity, standard deviation physicalMeasurement calcifying fluid ± ± Salinity thematicClassification min, calcifying fluid Salinity thematicClassification max, calcifying fluid Temperature, water physicalMeasurement calcifying fluid °C °C Temperature, water, standard deviation physicalMeasurement calcifying fluid ± ± Temperature, water physicalMeasurement min, calcifying fluid °C °C Temperature, water physicalMeasurement max, calcifying fluid °C °C Calcifying fluid, pH thematicClassification Potentiometric; NBS scale Calcifying fluid, pH, standard deviation physicalMeasurement Potentiometric; NBS scale ± ± Calcifying fluid, pH thematicClassification Potentiometric; min, NBS scale Calcifying fluid, pH thematicClassification Potentiometric; max, NBS scale Calcifying fluid, dissolved inorganic carbon physicalMeasurement µmol/kg µmol/kg Calcifying fluid, dissolved inorganic carbon, standard deviation physicalMeasurement ± ± Calcifying fluid, dissolved inorganic carbon physicalMeasurement min µmol/kg µmol/kg Calcifying fluid, dissolved inorganic carbon physicalMeasurement max µmol/kg µmol/kg Calcifying fluid, total alkalinity physicalMeasurement Calculated with seacarb package in R µmol/kg µmol/kg Calcifying fluid, total alkalinity, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Calcifying fluid, total alkalinity physicalMeasurement Calculated with seacarb package in R; min µmol/kg µmol/kg Calcifying fluid, total alkalinity physicalMeasurement Calculated with seacarb package in R; max µmol/kg µmol/kg Calcifying fluid, partial pressure of carbon dioxide physicalMeasurement Calculated with seacarb package in R ppmv ppmv Calcifying fluid, partial pressure of carbon dioxide, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Calcifying fluid, partial pressure of carbon dioxide physicalMeasurement Calculated with seacarb package in R; min ppmv ppmv Calcifying fluid, partial pressure of carbon dioxide physicalMeasurement Calculated with seacarb package in R; max ppmv ppmv Calcifying fluid, carbonate ion physicalMeasurement Calculated with seacarb package in R µmol/kg µmol/kg Calcifying fluid, carbonate ion, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Calcifying fluid, carbonate ion physicalMeasurement Calculated with seacarb package in R; min µmol/kg µmol/kg Calcifying fluid, carbonate ion physicalMeasurement Calculated with seacarb package in R; max µmol/kg µmol/kg Calcifying fluid, bicarbonate ion physicalMeasurement Calculated with seacarb package in R µmol/kg µmol/kg Calcifying fluid, bicarbonate ion, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Calcifying fluid, bicarbonate ion physicalMeasurement Calculated with seacarb package in R; min µmol/kg µmol/kg Calcifying fluid, bicarbonate ion physicalMeasurement Calculated with seacarb package in R; max µmol/kg µmol/kg Calcifying fluid, carbon dioxide physicalMeasurement Calculated with seacarb package in R µmol/kg µmol/kg Calcifying fluid, carbon dioxide, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Calcifying fluid, carbon dioxide physicalMeasurement Calculated with seacarb package in R; min µmol/kg µmol/kg Calcifying fluid, carbon dioxide physicalMeasurement Calculated with seacarb package in R; max µmol/kg µmol/kg Calcifying fluid, calcite saturation state thematicClassification Calculated with seacarb package in R Calcifying fluid, calcite saturation state, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Calcifying fluid, calcite saturation state thematicClassification Calculated with seacarb package in R; min Calcifying fluid, calcite saturation state thematicClassification Calculated with seacarb package in R; max Calcifying fluid, aragonite saturation state thematicClassification Calculated with seacarb package in R Calcifying fluid, aragonite saturation state, standard deviation physicalMeasurement Calculated with seacarb package in R ± ± Calcifying fluid, aragonite saturation state thematicClassification Calculated with seacarb package in R; min Calcifying fluid, aragonite saturation state thematicClassification Calculated with seacarb package in R; max Carbonate system computation flag thematicClassification Calculated using seacarb after Nisumaa et al. (2010) pH, total scale thematicClassification Calculated using seacarb after Nisumaa et al. (2010) Carbon dioxide physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Fugacity of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µatm µatm Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µatm µatm Bicarbonate ion physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Carbonate ion physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Carbon, inorganic, dissolved physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Aragonite saturation state thematicClassification Calculated using seacarb after Nisumaa et al. (2010) Calcite saturation state thematicClassification Calculated using seacarb after Nisumaa et al. (2010) text/tab-separated-values unknown https://doi.pangaea.de/10.1594/PANGAEA.995588?format=textfile download dataset The data set was checked for completeness, correctness, and consistency of metainformation. Validity of used methods was checked and - if applicable - precision and range of data. EVENT LABEL: Barnstable_OA * LATITUDE: 41.710400 * LONGITUDE: -70.305100 * METHOD/DEVICE: Experiment Related to 2026-01-01 publication https://doi.org/10.1073/pnas.2521539123 Unzueta-Martínez, Andrea

andrea_unzuetamartinez@fas.harvard.edu

author Delaney, Jennifer A author Morkeski, K author Ross, Abby author Wang, Zhaohui Aleck https://orcid.org/0000-0002-0540-662X information author Girguis, Peter R https://orcid.org/0000-0002-3599-8160 information author documentDigital Proceedings of the National Academy of Sciences of the United States of America 123(11) e2521539123 References 2010-01-01 publication https://doi.org/10.5194/essd-2-167-2010 Nisumaa, Anne-Marin

annemarin@gmail.com

author Pesant, Stephane

pesant@ebi.ac.uk

https://orcid.org/0000-0002-4936-5209 information author Bellerby, Richard G J

Richard.Bellerby@niva.no

http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 information author Delille, Bruno

bruno.delille@uliege.be

https://orcid.org/0000-0003-0502-8101 information author Middelburg, Jack J

jmiddelburg@nioo.knaw.nl

https://orcid.org/0000-0003-3601-9072 information author Orr, James C

j.orr@iaea.org

https://orcid.org/0000-0002-8707-7080 information author Riebesell, Ulf

uriebesell@geomar.de

https://orcid.org/0000-0002-9442-452X information author Tyrrell, Toby

t.tyrrell@noc.soton.ac.uk

author Wolf-Gladrow, Dieter A

dieter.wolf-gladrow@awi.de

https://orcid.org/0000-0001-9531-8668 information author Gattuso, Jean-Pierre

jean-pierre.gattuso@imev-mer.fr

https://orcid.org/0000-0002-4533-4114 information author documentDigital Earth System Science Data 2(2) 167-175 References 2024-01-01 publication https://doi.org/10.5194/essd-16-3771-2024 Yang, Yan

yangyan@xmu.edu.cn

https://orcid.org/0000-0003-4900-5606 information author Brockmann, Patrick author Galdino, Carolina author Schindler, Uwe

uschindler@pangaea.de

https://orcid.org/0000-0002-1900-4162 information author Gazeau, Frédéric

frederic.gazeau@imev-mer.fr

https://orcid.org/0000-0001-8807-4597 information author documentDigital Earth System Science Data 16(8) 3771-3780 References 2016-01-01 publication https://doi.org/10.5194/essd-8-79-2016 Yang, Yan

yangyan@xmu.edu.cn

https://orcid.org/0000-0003-4900-5606 information author Hansson, L author Gattuso, Jean-Pierre

jean-pierre.gattuso@imev-mer.fr

https://orcid.org/0000-0002-4533-4114 information author documentDigital Earth System Science Data 8(1) 79-87 Related code / software 2024-01-01 publication https://cran.r-project.org/web/packages/seacarb/index.html Gattuso, Jean-Pierre

jean-pierre.gattuso@imev-mer.fr

https://orcid.org/0000-0002-4533-4114 information author Epitalon, Jean-Marie author Lavigne, Héloïse

hlavigne@naturalsciences.be

https://orcid.org/0009-0006-6766-0638 information author Orr, James

James.Orr@lsce.ipsl.fr

author Gentili, Bernard

bernard.gentili@orange.fr

http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php information author Hagens, Mathilde https://orcid.org/0000-0003-3980-1043 information author Hofmann, Andreas author Mueller, Jens-Daniel author Proye, Aurélien author Rae, James https://orcid.org/0000-0003-3904-2526 information author Soetaert, Karline

karline.soetaert@nioz.nl

https://orcid.org/0000-0003-4603-7100 information author documentDigital Further details https://github.com/Andrea-Unzueta-Martinez/oyster-host-microbiome-transcriptomics documentDigital