10.1594/PANGAEA.995588Unzueta-Martínez, AndreaAndreaUnzueta-MartínezHarvard UniversityDelaney, Jennifer AJennifer ADelaneyHarvard UniversityMorkeski, KKMorkeskiWoods Hole Oceanographic InstitutionRoss, AbbyAbbyRossUniversity of Colorado BoulderWang, Zhaohui AleckZhaohui AleckWang0000-0002-0540-662XWoods Hole Oceanographic InstitutionGirguis, Peter RPeter RGirguis0000-0002-3599-8160Harvard UniversityPANGAEA2026Acid-base regulationAnimaliaBenthic animalsBenthosCoast and continental shelfContainers and aquaria (20-1000 L or < 1 m**2)Crassostrea virginicaEntire communityLaboratory experimentMolluscaNorth AtlanticOcean acidificationSingle speciesTemperateType of studySpecies, unique identificationTreatmentLocal TimeReplicatesSalinitySalinity, standard deviationTemperature, waterTemperature, water, standard deviationpH, NBS scalepH, standard deviationCarbon, inorganic, dissolvedCarbon, inorganic, dissolved, standard deviationAlkalinity, totalAlkalinity, total, standard deviationPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)Partial pressure of carbon dioxide, standard deviationCarbonate ionCarbonate ion, standard deviationBicarbonate ionBicarbonate ion, standard deviationCarbon dioxideCarbon dioxide, standard deviationCalcite saturation stateCalcite saturation state, standard deviationAragonite saturation stateAragonite saturation state, standard deviationCalcifying fluid, pHCalcifying fluid, pH, standard deviationCalcifying fluid, dissolved inorganic carbonCalcifying fluid, dissolved inorganic carbon, standard deviationCalcifying fluid, total alkalinityCalcifying fluid, total alkalinity, standard deviationCalcifying fluid, partial pressure of carbon dioxideCalcifying fluid, partial pressure of carbon dioxide, standard deviationCalcifying fluid, carbonate ionCalcifying fluid, carbonate ion, standard deviationCalcifying fluid, bicarbonate ionCalcifying fluid, bicarbonate ion, standard deviationCalcifying fluid, carbon dioxideCalcifying fluid, carbon dioxide, standard deviationCalcifying fluid, calcite saturation stateCalcifying fluid, calcite saturation state, standard deviationCalcifying fluid, aragonite saturation stateCalcifying fluid, aragonite saturation state, standard deviationCarbonate system computation flagpH, total scaleFugacity of carbon dioxide (water) at sea surface temperature (wet air)ExperimentPotentiometricCalculated with seacarb package in RCalculated using seacarb after Nisumaa et al. (2010)Ocean Acidification International Coordination Centre (OA-ICC)Yang, YanYanYang0000-0003-4900-5606Dataset10.1073/pnas.252153912310.5194/essd-2-167-201010.5194/essd-16-3771-202410.5194/essd-8-79-2016https://cran.r-project.org/web/packages/seacarb/index.htmlhttps://github.com/Andrea-Unzueta-Martinez/oyster-host-microbiome-transcriptomics1030 data pointstext/tab-separated-valuesCreative Commons Attribution 4.0 InternationalTo better understand oysters' molecular mechanisms and the role of their calcifying-fluid microbes, we conducted experiments that simulated a tidal cycle, measured calcifying fluid pH and total dissolved inorganic carbon, and characterized host and microbial gene expression via transcriptomics.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-06-18.-70.305141.7104