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Ibarrola, Irrintzi; Pérez-Cebrecos, Maitane; Antolín, Carmen; Prieto, Daniel; Urrutxurtu, Iñaki; Urrutia, Miren Bego; Gairín, Ignasi; Saavedra, Carlos; Navarro, Enrique (2026): Clearance rate and oxygen consumption (routine and standard) allometries in four families of Ruditapes decussatus at pre- and post-reproductive ages [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.995328

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Published: 2026-06-11 • DOI registered: 2026-06-11

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Abstract:
This dataset was generated to investigate the physiological basis of growth-rate variation in the grooved carpet shell clam, Ruditapes decussatus, at both inter-family and intra-family levels. The study examined whether differences in energy acquisition and metabolic expenditure contribute to the large variability in growth performance observed among full-sibling individuals reared under identical environmental conditions. Four full-sibling families were produced by controlled biparental crosses from broodstock collected in Cambados and maintained at aquaculture facilities of Institut de Recerca i Tecnologia Agroalimentàries. Two experiments were conducted during ontogeny: a juvenile stage experiment beginning 4 months after fertilization and an adult stage experiment conducted 18 months after fertilization. Clams were size-classified and maintained under controlled laboratory conditions for two months before physiological measurements. Clams were analyzed across their natural size distribution. The dataset contains morphometric and physiological measurements including shell length (mm), live weight (mg), dry weight of soft tissues (mg), shell dry weight (mg), total dry weight (mg), initial growth rate (mg day⁻¹), clearance rate (ml h⁻¹), routine metabolic rate (ml O₂ h⁻¹), and standard metabolic rate (ml O₂ h⁻¹). Measurements were obtained from individuals or homogeneous groups spanning the full size range within each family. Clearance rate was determined using open-flow feeding chambers supplied with Isochrysis galbana, while metabolic rates were estimated from oxygen consumption measured in closed respirometry chambers at 19 °C. Data collection was performed in laboratory facilities of the University of the Basque Country, following family production and early rearing at IRTA. The dataset includes morphometric records, physiological measurements, and allometric relationships describing the scaling of feeding and metabolic traits with body size during juvenile and adult stages. These data provide a resource for studies of growth heterogeneity, physiological energetics, allometric scaling, selective breeding, and aquaculture performance in marine bivalves. The dataset can be reused to investigate links between growth potential, energy balance, and family-related variation in physiological traits.
Keyword(s):
Allometric scaling; Energy allocation; Family-level growth variation; Growth rate variability; Physiological energetics; Ruditapes decussatus
Supplement to:
Ibarrola, Irrintzi; Pérez-Cebrecos, Maitane; Antolín, Carmen; Prieto, Daniel; Urrutxurtu, Iñaki; Urrutia, Miren Bego; Gairín, Ignasi; Saavedra, Carlos; Navarro, Enrique (2026): Energetic scaling mechanisms underlying family growth variation in Ruditapes decussatus. Marine Environmental Research, 220, 108237, https://doi.org/10.1016/j.marenvres.2026.108237
References:
Hildreth, D I; Crisp, D J (1976): A corrected formula for calculation of filtration rate of bivalve molluscs in an experimental flowing system. Journal of the Marine Biological Association of the United Kingdom, 56(1), 111-120, https://doi.org/10.1017/S0025315400020476
Pérez-Cebrecos, Maitane; Prieto, Daniel; Blanco-Rayón, Esther; Izagirre, Urtzi; Ibarrola, Irrintzi (2022): Differential tissue development compromising the growth rate and physiological performances of mussel. Marine Environmental Research, 180, 105725, https://doi.org/10.1016/j.marenvres.2022.105725
Prieto, Daniel; Tamayo, D; Urrutxurtu, Iñaki; Navarro, Enrique; Ibarrola, Irrintzi; Urrutia, Miren Bego (2020): Nature more than nurture affects the growth rate of mussels. Scientific Reports, 10(1), 3539, https://doi.org/10.1038/s41598-020-60312-y
Prieto, Daniel; Urrutxurtu, Iñaki; Navarro, Enrique; Urrutia, Miren Bego; Ibarrola, Irrintzi (2018): Mytilus galloprovincialis fast growing phenotypes under different restrictive feeding conditions: Fast feeders and energy savers. Marine Environmental Research, 140, 114-125, https://doi.org/10.1016/j.marenvres.2018.05.007
Funding:
Ministry of Economy, Industry and Competitiveness (MINECO), grant/award no. AGL-2017-87745-C2-1-R: Characterization of physiological and genetic differences in the growth of clams of interest in aquaculture
Ministry of Economy, Industry and Competitiveness (MINECO), grant/award no. AGL-2017-87745-C2-2: Physiology and genetics of growth in clams
Coverage:
Median Latitude: 42.450625 * Median Longitude: -3.525300 * South-bound Latitude: 40.627900 * West-bound Longitude: -8.821000 * North-bound Latitude: 43.330000 * East-bound Longitude: 0.659800
Date/Time Start: 2018-11-01T00:00:00 * Date/Time End: 2019-11-30T00:00:00
Event(s):
Lab_exp_R_decussatus_ad (Conducting a laboratory experiment with adult Ruditapes decussatus (18-month) at the Faculty of Science and Technology of the University of the Basque Country (EHU) in November 2019) * Latitude: 43.330000 * Longitude: -2.970000 * Date/Time Start: 2019-11-01T00:00:00 * Date/Time End: 2019-11-30T00:00:00 * Location: Leioa, Biscay, Basque Country, Spain * Method/Device: Laboratory experiment
Lab_exp_R_decussatus_juv (Conducting a laboratory experiment with juvenile Ruditapes decussatus (4-month) at the Faculty of Science and Technology of the University of the Basque Country (EHU) in November 2018) * Latitude: 43.330000 * Longitude: -2.970000 * Date/Time Start: 2018-11-01T00:00:00 * Date/Time End: 2018-11-30T00:00:00 * Location: Leioa, Biscay, Basque Country, Spain * Method/Device: Laboratory experiment
R_decussatus_breeding_rearing (Breeding and rearing of Ruditapes decussatus until clams were 4-month old at the aquaculture facilities of the Institute of Agrifood Research and Technology (IRTA) in La Rápita, Catalonia) * Latitude: 40.627900 * Longitude: 0.659800 * Location: La Ràpita, Catalonia, Spain * Method/Device: Breeding and rearing in captivity
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1ExperimentExpIbarrola, Irrintzi
2Type of studyStudy typeIbarrola, IrrintziIncubation in flow through chamber
3Temperature, waterTemp°CIbarrola, IrrintziExperimental condition
4SalinitySalIbarrola, IrrintziExperimental condition
5Species, unique identificationSpecies UIDIbarrola, Irrintzi
6Species, unique identification (URI)Species UID (URI)Ibarrola, Irrintzi
7Species, unique identification (Semantic URI)Species UID (Semantic URI)Ibarrola, Irrintzi
8Life stageLife stageIbarrola, Irrintzi
9FamilyFamilyIbarrola, IrrintziID for the four full-sib families studied (F1, F2, F3, F4)
10Size classSize classIbarrola, IrrintziSize groups/classes: SS (extra small, 2–3 mm), S (small, 5–7 mm), M (medium, 9–12 mm) and L (large, 13–16 mm)
11Number of individualsInd No#Ibarrola, IrrintziNumberof individuals per chamber
12Biomass per individual, wet massBiom/ind wmmg/#Ibarrola, IrrintziWeighedMean individual live weight
13Biomass, total, wet massBiom tot wmmgIbarrola, IrrintziWeighedTotal live weight
14Clearance rate per individualCRml/#/hIbarrola, IrrintziMean rates determined using flow through chambers and calculated according to Hildreth and Crisp (1976)Mean individual clearance rate; flow-through; according to Hildreth and Crisp (1976)
15Metabolic rate of oxygen per individualMR O2/indml/#/hIbarrola, IrrintziMean rates computed from the decline in oxygen concentration in the chambers during 3–4 h, or until values decreased 20–30% of initial baselineMean individual routine metabolic rate; rates of oxygen consumption were computed from the decline in oxygen concentration in the chambers registered during 3–4 h, or until values decreased 20–30% of initial baseline.
16Metabolic rate of oxygen per individualMR O2/indml/#/hIbarrola, IrrintziMean rates computed from the decline in oxygen concentration in the chambers during 3–4 h, or until values decreased 20–30% of initial baseline; after initial 7-day starvation according to Prieto et al. (2018, 2020), Pérez-Cebrecos et al. (2022)Mean individual standard metabolic rate; same as routine metabolic rate but with a previous 7-day starvation period according to Prieto et al. (2018, 2020), Pérez-Cebrecos et al. (2022).
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
2116 data points

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