Cueto-Vega Rosa rosacueto@lamolina.edu.pe Flye-Sainte-Marie Jonathan flye@univ-brest.fr Palacios Fernando 20120409@lamolina.edu.pe Carhuapoma Wilson wcarhuapoma@imarpe.gob.pe 0000-0001-8474-9710 García-Corona José Luis Jose.Corona@univ-brest.fr Aguirre-Velarde Arturo aaguirre@imarpe.gob.pe Jean Fred fjean@univ-brest.fr Gil-Kodaka Patricia pgilkodaka@lamolina.edu.pe Mendo Jaime jmendo@lamolina.edu.pe Thouzeau Gérard gerard.thouzeau@univ-brest.fr 2026 Physiological and growth response data of the Peruvian scallop Argopecten purpuratus during a 51-day factorial experiment under hypoxia and seawater acidification dataset https://doi.pangaea.de/10.1594/PANGAEA.994158 2026-05-11T08:55:55 This dataset contains the physical, biometrical, and physiological parameters of the Peruvian scallop Argopecten purpuratus collected during a 51-day laboratory experiment. The study followed a 2×2 factorial design crossing two oxygen levels (Hypoxia 20% sat. vs. Normoxia 100% sat.) and two pH levels (Low pH 7.4 vs. Normal pH 7.8). Data includes daily environmental monitoring of the experimental tanks (temperature, pH, dissolved oxygen, salinity and total alcalinity), daily survival rates, and bi-weekly measurements of shell height, dry weight of tissues ( gonad, flesh, shell), and physiological indices such as the gonadosomatic index, Fulton's condition index, standardized clearance and net calcification rates.This dataset supports the findings on the article Trade-off between growth and reproduction in Argopecten purpuratus (L.) scallops exposed to medium-term hypoxia and acidification. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-05-11. Cueto-Vega Rosa rosacueto@lamolina.edu.pe Flye-Sainte-Marie Jonathan flye@univ-brest.fr García-Corona José Luis Jose.Corona@univ-brest.fr Palacios Fernando 20120409@lamolina.edu.pe Jean Fred fjean@univ-brest.fr Aguirre-Velarde Arturo aaguirre@imarpe.gob.pe Gil-Kodaka Patricia pgilkodaka@lamolina.edu.pe Mendo Jaime jmendo@lamolina.edu.pe Thouzeau Gérard gerard.thouzeau@univ-brest.fr 2024 Trade-off between growth and reproduction in Argopecten purpuratus (L.) scallops exposed to medium-term hypoxia and acidification journal article Aquaculture 586 https://doi.org/10.1016/j.aquaculture.2024.740713 740713 Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html Environmental Monitoring Data https://download.pangaea.de/reference/139854/attachments/Environmental_Monitoring.csv -81.130444 -81.130444 -4.178351 -4.178351 -81.130444 -4.178351 2018-06-07T00:00:00 2018-08-02T00:00:00 FPDSLS Franco-Peruvian Doctoral School in Life Sciences https://prociencia.gob.pe OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 Hatchery_AgroMar_del_Pacífico -4.178351 -81.130444 Experiment EXP 34889 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Cueto-Vega Rosa rosacueto@lamolina.edu.pe Study type Species, unique identification Species UID species Cueto-Vega Rosa rosacueto@lamolina.edu.pe Species UID Species, unique identification (URI) Species UID (URI) species Cueto-Vega Rosa rosacueto@lamolina.edu.pe Species UID (URI) Species, unique identification (Semantic URI) Species UID (Semantic URI) species Cueto-Vega Rosa rosacueto@lamolina.edu.pe Species UID (Semantic URI) Treatment Treat treatment Cueto-Vega Rosa rosacueto@lamolina.edu.pe Treat Day of experiment DOE day day Time T http://dbpedia.org/resource/Time Cueto-Vega Rosa rosacueto@lamolina.edu.pe DOE [day] DATE/TIME Date/Time http://en.wikipedia.org/wiki/ISO_8601 Time T http://dbpedia.org/resource/Time Cueto-Vega Rosa rosacueto@lamolina.edu.pe Date/Time Identification ID Cueto-Vega Rosa rosacueto@lamolina.edu.pe Aquarium ID (Aquarium) Shell height Shell h mm Length L http://dbpedia.org/resource/Length Cueto-Vega Rosa rosacueto@lamolina.edu.pe Shell h [mm] Shell, dry mass SDM g dry mass https://en.wikipedia.org/wiki/Dry_matter Mass M http://dbpedia.org/resource/Mass Cueto-Vega Rosa rosacueto@lamolina.edu.pe SDM [g] Gonad, dry mass Gon dm g dry mass https://en.wikipedia.org/wiki/Dry_matter Mass M http://dbpedia.org/resource/Mass Cueto-Vega Rosa rosacueto@lamolina.edu.pe Gon dm [g] Flesh, dry mass Flesh dm g dry mass https://en.wikipedia.org/wiki/Dry_matter Mass M http://dbpedia.org/resource/Mass Cueto-Vega Rosa rosacueto@lamolina.edu.pe Flesh dm [g] Survival Survival % Dimensionless Ratio ψ Cueto-Vega Rosa rosacueto@lamolina.edu.pe Survival [%] Clearance rate, standardized CR std l/h/# Cueto-Vega Rosa rosacueto@lamolina.edu.pe CR std [l/h/#] Growth rate µ mm/day growth rate http://purl.obolibrary.org/obo/PATO_0001492 Linear Velocity http://dbpedia.org/resource/Velocity Cueto-Vega Rosa rosacueto@lamolina.edu.pe µ [mm/day] Condition index CI g/cm**3 Density http://dbpedia.org/resource/Density Cueto-Vega Rosa rosacueto@lamolina.edu.pe CI [g/cm**3] Calcification rate of calcium carbonate Calc rate CaCO3 mg/g/day calcification rate calcium carbonate http://purl.obolibrary.org/obo/CHEBI_3311 Frequency http://dbpedia.org/resource/Frequency Cueto-Vega Rosa rosacueto@lamolina.edu.pe Net Calc rate CaCO3 [mg/g/day] (Net) Gonadosomatic index GSI % https://en.wikipedia.org/wiki/Gonadosomatic_Index Dimensionless Ratio ψ Cueto-Vega Rosa rosacueto@lamolina.edu.pe GSI [%] Survival Survival % Dimensionless Ratio ψ Cueto-Vega Rosa rosacueto@lamolina.edu.pe Daily Survival [%] (Daily) Oxygen saturation O2 sat % Dimensionless Ratio ψ Cueto-Vega Rosa rosacueto@lamolina.edu.pe O2 sat [%] Oxygen saturation, standard error O2 sat std e ± standard error std e https://en.wikipedia.org/wiki/Standard_error Cueto-Vega Rosa rosacueto@lamolina.edu.pe O2 sat std e [±] pH, NBS scale pH NBS Cueto-Vega Rosa rosacueto@lamolina.edu.pe pH NBS pH, standard error pH std e ± standard error std e https://en.wikipedia.org/wiki/Standard_error Cueto-Vega Rosa rosacueto@lamolina.edu.pe NBS scale pH std e [±] (NBS scale) Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Cueto-Vega Rosa rosacueto@lamolina.edu.pe Temp [°C] Temperature, water, standard error T std e ± Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 standard error std e https://en.wikipedia.org/wiki/Standard_error Cueto-Vega Rosa rosacueto@lamolina.edu.pe T std e [±] Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Cueto-Vega Rosa rosacueto@lamolina.edu.pe AT [µmol/kg] Alkalinity, total, standard error AT std e ± total https://www.oxforddictionaries.com/definition/american_english/total standard error std e https://en.wikipedia.org/wiki/Standard_error Cueto-Vega Rosa rosacueto@lamolina.edu.pe AT std e [±] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Cueto-Vega Rosa rosacueto@lamolina.edu.pe pCO2water_SST_wet [µatm] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error pCO2water_SST_wet std e ± partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 standard error std e https://en.wikipedia.org/wiki/Standard_error Cueto-Vega Rosa rosacueto@lamolina.edu.pe pCO2water_SST_wet std e [±] Calcite saturation state Omega Cal Cueto-Vega Rosa rosacueto@lamolina.edu.pe Omega Cal Calcite saturation state, standard error Omega Cal std e ± standard error std e https://en.wikipedia.org/wiki/Standard_error Cueto-Vega Rosa rosacueto@lamolina.edu.pe Omega Cal std e [±] Aragonite saturation state Omega Arg aragonite saturation state Cueto-Vega Rosa rosacueto@lamolina.edu.pe Omega Arg Aragonite saturation state, standard error Omega Arg std e ± aragonite saturation state standard error std e https://en.wikipedia.org/wiki/Standard_error Cueto-Vega Rosa rosacueto@lamolina.edu.pe Omega Arg std e [±] Salinity Sal salinity http://purl.obolibrary.org/obo/PATO_0085001 Cueto-Vega Rosa rosacueto@lamolina.edu.pe Sal Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CSC flag pH, total scale pHT Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pHT Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 [µmol/kg] Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2water_SST_wet [µatm] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2water_SST_wet [µatm] Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- [µmol/kg] Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- [µmol/kg] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 DIC [µmol/kg] Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels Animalia Argopecten purpuratus Benthic animals Benthos Calcification/Dissolution Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Growth/Morphology Laboratory experiment Mollusca Mortality/Survival Ocean acidification Oxygen Reproduction Single species South Pacific Tropical author10403 author10414 author104855 author107699 author107700 author117511 author117512 author117513 author117514 author117515 author117516 author21564 author21790 author22144 author22148 author22159 author22414 author22445 author24922 author27217 author28754 author29105 author29138 author29176 author32865 author34379 author39204 author48750 author51658 author55788 author56746 author59171 author59172 author59173 author69140 author85880 curlevel30 event3405326 geocode1599 geocode1600 geocode1601 inst20253 journal1360 journal16590 license21 method6426 method7423 param101057 param101058 param101059 param101062 param130798 param131746 param149020 param185520 param1883 param45642 param49312 param49313 param50890 param509969 param510679 param534368 param534369 param54293 param54294 param563275 param563276 param563277 param7056 param716 param717 param78394 param80114 param82111 param82364 param82365 param82366 param83441 param84250 param84258 param86991 param87073 param96278 pi117511 pi48750 project4173 project5101 ref124625 ref128879 ref139852 ref139854 ref31273 ref79258 term1073490 term1073493 term1073966 term1074204 term2606205 term2698012 term37606 term37664 term38253 term38477 term38527 term38564 term38841 term38845 term38851 term38856 term38857 term38860 term38869 term38874 term38878 term38886 term38887 term38888 term40646 term41013 term41029 term42527 term43298 term43792 term43794 term43821 term43834 term43838 term43863 term43876 term43892 term43972 term43975 term44001 term44030 term48166 term48982 term49384 term49506 term73928