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Figuerola, Blanca; Capdevila, Pol; Cerdà-Domènech, Marc; Garrabou, Joaquim; Mirasole, Alice; Bassols, Pol; Campo, Javier del; Teixidó, Núria (2026): Seawater carbonate chemistry and effects of acidification and mean temperature on the total area and necrosis of Pentapora ottomuelleriana [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.993058

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Published: 2026-03-16 • DOI registered: 2026-04-14

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Abstract:
This dataset includes the five-year trajectory of Pentapora ottomuelleriana cover after summer in populations inhabiting areas inside and outside a volcanic CO₂ vent on Ischia Island.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. The original carbonate chemistry data are from Teixidó et al. (2020). In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-03-16.
Keyword(s):
Animalia; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Cnidaria; CO2 vent; Coast and continental shelf; Field observation; Mediterranean Sea; Mortality/Survival; Ocean acidification; Pentapora ottomuelleriana; Single species; Temperate; Temperature
Related to:
Figuerola, Blanca; Capdevila, Pol; Cerdà-Domènech, Marc; Garrabou, Joaquim; Mirasole, Alice; Bassols, Pol; del Campo, Javier; Teixidó, Núria (2025): Interactive effects of ocean acidification and warming disrupt calcification and microbiome composition in bryozoans. Communications Biology, 8(1), 1135, https://doi.org/10.1038/s42003-025-08524-8
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Teixidó, Núria; Caroselli, Erik; Alliouane, Samir; Ceccarelli, Chiara; Comeau, Steeve; Gattuso, Jean-Pierre; Fici, Pietro; Micheli, Fiorenza; Mirasole, Alice; Monismith, Stephen G; Munari, M; Palumbi, Stephen R; Sheets, Elizabeth; Urbini, Lidia; De Vittor, Cinzia; Goffredo, Stefano; Gambi, Maria Cristina (2020): Ocean acidification causes variable trait‐shifts in a coral species. Global Change Biology, 26(12), 6813-6830, https://doi.org/10.1111/gcb.15372
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Median Latitude: 40.735300 * Median Longitude: 13.923125 * South-bound Latitude: 40.711600 * West-bound Longitude: 13.882050 * North-bound Latitude: 40.759000 * East-bound Longitude: 13.964200
Date/Time Start: 2016-10-17T00:00:00 * Date/Time End: 2020-10-19T00:00:00
Event(s):
Grotta_del_Mago_CO2_vent * Latitude: 40.711600 * Longitude: 13.964200 * Date/Time Start: 2016-10-17T00:00:00 * Date/Time End: 2020-10-19T00:00:00
Punta_Vico * Latitude: 40.759000 * Longitude: 13.882050 * Date/Time Start: 2016-10-17T00:00:00 * Date/Time End: 2020-09-22T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Event labelEventFiguerola, Blanca
2Type of studyStudy typeFiguerola, Blanca
3Species, unique identificationSpecies UIDFiguerola, Blanca
4Species, unique identification (URI)Species UID (URI)Figuerola, Blanca
5Species, unique identification (Semantic URI)Species UID (Semantic URI)Figuerola, Blanca
6Year of samplingYear samplFiguerola, Blanca
7DateDateFiguerola, Blanca
8TreatmentTreatFiguerola, Blanca
9Sample code/labelSample labelFiguerola, Blanca
10AreaAreacm2Figuerola, Blancatotal
11AreaAreacm2Figuerola, Blancaportion
12CommentCommentFiguerola, Blancaportion_necrosis
13SalinitySalFiguerola, Blanca
14Temperature, waterTemp°CFiguerola, Blanca
15pH, total scalepHTFiguerola, Blanca
16Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFiguerola, Blanca
17Carbon, inorganic, dissolvedDICµmol/kgFiguerola, Blanca
18Alkalinity, totalATµmol/kgFiguerola, Blanca
19Aragonite saturation stateOmega ArgFiguerola, Blanca
20Calcite saturation stateOmega CalFiguerola, Blanca
21Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
22Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
24Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
26Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
3544 data points

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