Anderson Sean R seanceltics34@gmail.com University of New Hampshire UNH http://www.unh.edu Woods Hole Oceanographic Institution WHOI https://ror.org/03zbnzt98 Silliman Katherine National Oceanic and Atmospheric Administration NOAA http://www.noaa.gov/ https://ror.org/02z5nhe81 Mississippi State University https://ror.org/0432jq872 Barbero Leticia 0000-0002-8858-5247 National Oceanic and Atmospheric Administration NOAA http://www.noaa.gov/ https://ror.org/02z5nhe81 University of Miami Umiami http://www.miami.edu/ https://ror.org/02dgjyy92 Gomez Fabian A Mississippi State University https://ror.org/0432jq872 National Oceanic and Atmospheric Administration NOAA http://www.noaa.gov/ https://ror.org/02z5nhe81 Stauffer Beth A University of Louisiana at Lafayette http://www.louisiana.edu https://ror.org/01x8rc503 Schnetzer Astrid 0000-0003-2063-0635 North Carolina State University https://ror.org/04tj63d06 Kelble Christopher R National Oceanic and Atmospheric Administration NOAA http://www.noaa.gov/ https://ror.org/02z5nhe81 Thompson Luke R National Oceanic and Atmospheric Administration NOAA http://www.noaa.gov/ https://ror.org/02z5nhe81 Mississippi State University https://ror.org/0432jq872 2026 Seawater carbonate chemistry and microbial community dynamics over large spatial and environmental gradients in a subtropical ocean basin dataset https://doi.org/10.1594/PANGAEA.992922 2026-03-11T09:20:32 Microbes are fundamental to ocean ecosystem function, yet they remain understudied across broad spatial and environmental scales in dynamic regions like the Gulf of America/Gulf of Mexico (GOM). We employed DNA metabarcoding to characterize prokaryotes (16S V4–V5) and protists (18S V9) across 51 stations, spanning 16 inshore–offshore transects and three depths. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-03-11. Anderson Sean R seanceltics34@gmail.com Silliman Katherine Barbero Leticia 0000-0002-8858-5247 Gomez Fabian A Stauffer Beth A Schnetzer Astrid 0000-0003-2063-0635 Kelble Christopher R Thompson Luke R 2026 Microbial community dynamics over large spatial and environmental gradients in a subtropical ocean basin journal article Applied and Environmental Microbiology 92(2) https://doi.org/10.1128/aem.01889-25 e01889-25 Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html DNA sampling in the Gulf of Mexico on GOMECC-4 webpage https://zenodo.org/records/13102580 Barbero Leticia 0000-0002-8858-5247 Stefanick Andrew Hooper James 0000-0002-1796-6800 Wanninkhof Rik rik.wanninkhof@noaa.gov http://www.aoml.noaa.gov/about_us/staff/?lname=WANNINKHOF&fname=Richard Baringer Molly O Smith Ian Zhang Jia-Zhong jia-zhong.zhang@noaa.gov 0000-0002-1138-2556 Martín-Mayor Macarena Byrne Robert H Langdon Chris 0000-0002-3043-3806 Stauffer Beth A 2024 Carbon-related, hydrographic data collected during th NOAA Ship Ronald H. Brown 4th Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-4) cruise in Gulf of Mexico and North Atlantic Ocean from 2021-09-13 to 2021-10-21 (NCEI Accession 0294320) dataset NOAA National Centers for Environmental Information https://doi.org/10.25921/4TWF-PP50 Silliman Katherine Anderson Sean R seanceltics34@gmail.com Thompson Luke R 2024 eDNA from Gulf of Mexico Ecosystems and Carbon Cruise 2021 (GOMECC-4) dataset United States Geological Survey https://doi.org/10.15468/SM6FPZ 79.618 97.639 18.836 30.111 88.63111513859282 25.33708528784647 2.0 3326.0 OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 18138 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Anderson Sean R seanceltics34@gmail.com Study type Sample code/label Sample label Anderson Sean R seanceltics34@gmail.com Sample label Group Group group http://purl.obolibrary.org/obo/CHEBI_24433 Anderson Sean R seanceltics34@gmail.com cluster_16S Group (cluster_16S) Group Group group http://purl.obolibrary.org/obo/CHEBI_24433 Anderson Sean R seanceltics34@gmail.com cluster_18S Group (cluster_18S) Replicate Repl Anderson Sean R seanceltics34@gmail.com Repl Station label Station Anderson Sean R seanceltics34@gmail.com Station Subregion Subreg Anderson Sean R seanceltics34@gmail.com Subreg Group Group group http://purl.obolibrary.org/obo/CHEBI_24433 Anderson Sean R seanceltics34@gmail.com distance Group (distance) LATITUDE Latitude http://en.wikipedia.org/wiki/ISO_6709 Anderson Sean R seanceltics34@gmail.com Latitude LONGITUDE Longitude http://en.wikipedia.org/wiki/ISO_6709 Anderson Sean R seanceltics34@gmail.com Longitude DEPTH, water Depth water m depth http://purl.obolibrary.org/obo/PATO_0001595 water http://purl.obolibrary.org/obo/CHEBI_15377 Length L http://dbpedia.org/resource/Length Anderson Sean R seanceltics34@gmail.com Depth water [m] Water depth description Water depth descr Anderson Sean R seanceltics34@gmail.com Water depth descr Water volume, filtered Vol filtered ml Volume http://dbpedia.org/resource/Volume water column Anderson Sean R seanceltics34@gmail.com Vol filtered [ml] Salinity Sal salinity http://purl.obolibrary.org/obo/PATO_0085001 Anderson Sean R seanceltics34@gmail.com Sal Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Anderson Sean R seanceltics34@gmail.com Temp [°C] Oxygen O2 µmol/kg oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 Molar Concentration Anderson Sean R seanceltics34@gmail.com O2 [µmol/kg] Phosphate [PO4]3- µmol/kg phosphate http://purl.obolibrary.org/obo/CHEBI_26020 Molar Concentration Anderson Sean R seanceltics34@gmail.com [PO4]3- [µmol/kg] Silicate Si(OH)4 µmol/kg Molar Concentration Anderson Sean R seanceltics34@gmail.com Si(OH)4 [µmol/kg] Nitrate [NO3]- µmol/kg nitrate http://purl.obolibrary.org/obo/CHEBI_17632 Molar Concentration Anderson Sean R seanceltics34@gmail.com [NO3]- [µmol/kg] Nitrite [NO2]- µmol/kg nitrite http://purl.obolibrary.org/obo/CHEBI_16301 Molar Concentration Anderson Sean R seanceltics34@gmail.com [NO2]- [µmol/kg] Ammonium [NH4]+ µmol/kg ammonium http://purl.obolibrary.org/obo/CHEBI_28938 Molar Concentration Anderson Sean R seanceltics34@gmail.com [NH4]+ [µmol/kg] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Anderson Sean R seanceltics34@gmail.com DIC [µmol/kg] Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Anderson Sean R seanceltics34@gmail.com AT [µmol/kg] Carbonate ion [CO3]2- µmol/kg Molar Concentration Anderson Sean R seanceltics34@gmail.com [CO3]2- [µmol/kg] Aragonite saturation state Omega Arg aragonite saturation state Anderson Sean R seanceltics34@gmail.com Omega Arg pH, total scale pHT Anderson Sean R seanceltics34@gmail.com corrected pHT (corrected) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Anderson Sean R seanceltics34@gmail.com corrected pCO2water_SST_wet [µatm] (corrected) Deoxyribonucleic acid DNA deoxyribonucleic acid http://purl.obolibrary.org/obo/CHEBI_16991 Anderson Sean R seanceltics34@gmail.com conc DNA (conc) Deoxyribonucleic acid DNA deoxyribonucleic acid http://purl.obolibrary.org/obo/CHEBI_16991 Anderson Sean R seanceltics34@gmail.com yield DNA (yield) Deoxyribonucleic acid DNA deoxyribonucleic acid http://purl.obolibrary.org/obo/CHEBI_16991 Anderson Sean R seanceltics34@gmail.com yield_filtered DNA (yield_filtered) Fluorescence Fluorescence fluorescence http://purl.obolibrary.org/obo/PATO_0000018 Anderson Sean R seanceltics34@gmail.com Fluorescence Ratio Ratio ratio Anderson Sean R seanceltics34@gmail.com Alk/DIC Ratio (Alk/DIC) Comment Comment Anderson Sean R seanceltics34@gmail.com alk_dic_oa Comment (alk_dic_oa) Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CSC flag pH, total scale pHT Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pHT Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 [µmol/kg] Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2water_SST_wet [µatm] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2water_SST_wet [µatm] Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- [µmol/kg] Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- [µmol/kg] Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable Coast and continental shelf Community composition and diversity Entire community Field observation North Atlantic Open ocean Pelagos Temperate Tropical author102756 author10403 author10414 author107699 author107700 author115831 author115832 author115833 author115834 author115835 author115836 author115837 author115838 author115839 author21469 author21564 author22144 author22148 author22159 author22414 author22445 author23426 author24922 author27217 author28754 author29138 author29176 author32865 author33393 author34379 author34766 author35873 author39204 author48750 author49763 author51658 author55788 author56746 author59171 author59172 author59173 author69140 author97731 curlevel30 geocode1600 geocode1601 geocode1619 inst16105 inst20185 inst20253 inst21152 inst22053 inst22655 inst2521 inst406 journal1291 journal16590 license21 method6426 param102005 param106420 param129269 param1570 param185520 param49312 param49313 param50534 param513699 param533708 param534369 param54293 param54294 param545188 param716 param717 param790 param80103 param80104 param80105 param80106 param80107 param80114 param80119 param82111 param82364 param82365 param82366 param83744 param83933 param87073 pi115831 pi48750 project4173 ref124625 ref128879 ref138358 ref138359 ref138360 ref138361 ref31273 ref79258 term1073131 term1073173 term1073482 term1073483 term1073484 term1073490 term1073493 term1073521 term1074077 term1074317 term2606205 term2663825 term2698012 term38253 term38477 term38494 term38843 term38851 term38852 term38855 term38856 term38858 term38859 term38896 term40646 term40716 term43298 term43821 term43834 term43863 term43972 term43984 term43996 term44030 term48166 term49506