de.pangaea.dataset992922 und dataset PANGAEA
info@pangaea.de
https://www.pangaea.de/ information pointOfContact 2026-04-14T01:12:35Z https://doi.pangaea.de/10.1594/PANGAEA.992922 <gco:CharacterString>Seawater carbonate chemistry and microbial community dynamics over large spatial and environmental gradients in a subtropical ocean basin</gco:CharacterString> 2026-03-11T09:20:32 publication https://doi.org/10.1594/PANGAEA.992922 Anderson, Sean R
seanceltics34@gmail.com
author Silliman, Katherine author Barbero, Leticia https://orcid.org/0000-0002-8858-5247 information author Gomez, Fabian A author Stauffer, Beth A author Schnetzer, Astrid https://orcid.org/0000-0003-2063-0635 information author Kelble, Christopher R author Thompson, Luke R author PANGAEA
info@pangaea.de
https://www.pangaea.de/ information publisher tableDigital Microbes are fundamental to ocean ecosystem function, yet they remain understudied across broad spatial and environmental scales in dynamic regions like the Gulf of America/Gulf of Mexico (GOM). We employed DNA metabarcoding to characterize prokaryotes (16S V4–V5) and protists (18S V9) across 51 stations, spanning 16 inshore–offshore transects and three depths. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-03-11. completed Anderson, Sean R
seanceltics34@gmail.com
principalInvestigator Yang, Yan
yangyan@xmu.edu.cn
https://orcid.org/0000-0003-4900-5606 information principalInvestigator Coast and continental shelf Community composition and diversity Entire community Field observation North Atlantic Open ocean Pelagos Temperate Tropical theme <gco:CharacterString>PANGAEA Keyword List</gco:CharacterString> 1995-01-01 creation PANGAEA
info@pangaea.de
https://www.pangaea.de/ information pointOfContact OA-ICC Ocean Acidification International Coordination Centre theme <gco:CharacterString>PANGAEA Project List</gco:CharacterString> 1995-01-01 creation PANGAEA
info@pangaea.de
https://www.pangaea.de/ information pointOfContact copyright copyright CC-BY-4.0: Creative Commons Attribution 4.0 International textTable und geoscientificInformation 79.618 97.639 18.836 30.111 2.0 3326.0 Type of study thematicClassification Sample code/label thematicClassification Group thematicClassification cluster_16S Group thematicClassification cluster_18S Replicate thematicClassification Station label thematicClassification Subregion thematicClassification Group thematicClassification distance LATITUDE thematicClassification LONGITUDE thematicClassification DEPTH, water physicalMeasurement m m Water depth description thematicClassification Water volume, filtered physicalMeasurement ml ml Salinity thematicClassification Temperature, water physicalMeasurement °C °C Oxygen physicalMeasurement µmol/kg µmol/kg Phosphate physicalMeasurement µmol/kg µmol/kg Silicate physicalMeasurement µmol/kg µmol/kg Nitrate physicalMeasurement µmol/kg µmol/kg Nitrite physicalMeasurement µmol/kg µmol/kg Ammonium physicalMeasurement µmol/kg µmol/kg Carbon, inorganic, dissolved physicalMeasurement µmol/kg µmol/kg Alkalinity, total physicalMeasurement µmol/kg µmol/kg Carbonate ion physicalMeasurement µmol/kg µmol/kg Aragonite saturation state thematicClassification pH, total scale thematicClassification corrected Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement corrected µatm µatm Deoxyribonucleic acid thematicClassification conc Deoxyribonucleic acid thematicClassification yield Deoxyribonucleic acid thematicClassification yield_filtered Fluorescence thematicClassification Ratio thematicClassification Alk/DIC Comment thematicClassification alk_dic_oa Carbonate system computation flag thematicClassification Calculated using seacarb after Nisumaa et al. (2010) pH, total scale thematicClassification Calculated using seacarb after Nisumaa et al. (2010) Carbon dioxide physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Fugacity of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µatm µatm Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µatm µatm Bicarbonate ion physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Carbonate ion physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Aragonite saturation state thematicClassification Calculated using seacarb after Nisumaa et al. (2010) Calcite saturation state thematicClassification Calculated using seacarb after Nisumaa et al. (2010) text/tab-separated-values unknown https://doi.pangaea.de/10.1594/PANGAEA.992922?format=textfile download dataset The data set was checked for completeness, correctness, and consistency of metainformation. Validity of used methods was checked and - if applicable - precision and range of data. Related to <gco:CharacterString>Microbial community dynamics over large spatial and environmental gradients in a subtropical ocean basin</gco:CharacterString> 2026-01-01 publication https://doi.org/10.1128/aem.01889-25 Anderson, Sean R
seanceltics34@gmail.com
author Silliman, Katherine author Barbero, Leticia https://orcid.org/0000-0002-8858-5247 information author Gomez, Fabian A author Stauffer, Beth A author Schnetzer, Astrid https://orcid.org/0000-0003-2063-0635 information author Kelble, Christopher R author Thompson, Luke R author documentDigital Applied and Environmental Microbiology 92(2) e01889-25 References <gco:CharacterString>EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification</gco:CharacterString> 2010-01-01 publication https://doi.org/10.5194/essd-2-167-2010 Nisumaa, Anne-Marin
annemarin@gmail.com
author Pesant, Stephane
pesant@ebi.ac.uk
https://orcid.org/0000-0002-4936-5209 information author Bellerby, Richard G J
Richard.Bellerby@niva.no
http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 information author Delille, Bruno
bruno.delille@uliege.be
https://orcid.org/0000-0003-0502-8101 information author Middelburg, Jack J
jmiddelburg@nioo.knaw.nl
https://orcid.org/0000-0003-3601-9072 information author Orr, James C
j.orr@iaea.org
https://orcid.org/0000-0002-8707-7080 information author Riebesell, Ulf
uriebesell@geomar.de
https://orcid.org/0000-0002-9442-452X information author Tyrrell, Toby
t.tyrrell@noc.soton.ac.uk
author Wolf-Gladrow, Dieter A
dieter.wolf-gladrow@awi.de
https://orcid.org/0000-0001-9531-8668 information author Gattuso, Jean-Pierre
jean-pierre.gattuso@imev-mer.fr
https://orcid.org/0000-0002-4533-4114 information author documentDigital Earth System Science Data 2(2) 167-175 References <gco:CharacterString>An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal</gco:CharacterString> 2024-01-01 publication https://doi.org/10.5194/essd-16-3771-2024 Yang, Yan
yangyan@xmu.edu.cn
https://orcid.org/0000-0003-4900-5606 information author Brockmann, Patrick author Galdino, Carolina author Schindler, Uwe
uschindler@pangaea.de
https://orcid.org/0000-0002-1900-4162 information author Gazeau, Frédéric
frederic.gazeau@imev-mer.fr
https://orcid.org/0000-0001-8807-4597 information author documentDigital Earth System Science Data 16(8) 3771-3780 References <gco:CharacterString>Data compilation on the biological response to ocean acidification: an update</gco:CharacterString> 2016-01-01 publication https://doi.org/10.5194/essd-8-79-2016 Yang, Yan
yangyan@xmu.edu.cn
https://orcid.org/0000-0003-4900-5606 information author Hansson, L author Gattuso, Jean-Pierre
jean-pierre.gattuso@imev-mer.fr
https://orcid.org/0000-0002-4533-4114 information author documentDigital Earth System Science Data 8(1) 79-87 Related code / software <gco:CharacterString>seacarb: seawater carbonate chemistry with R. R package version 3.3.3</gco:CharacterString> 2024-01-01 publication https://cran.r-project.org/web/packages/seacarb/index.html Gattuso, Jean-Pierre
jean-pierre.gattuso@imev-mer.fr
https://orcid.org/0000-0002-4533-4114 information author Epitalon, Jean-Marie author Lavigne, Héloïse
hlavigne@naturalsciences.be
author Orr, James
James.Orr@lsce.ipsl.fr
author Gentili, Bernard
bernard.gentili@orange.fr
http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php information author Hagens, Mathilde https://orcid.org/0000-0003-3980-1043 information author Hofmann, Andreas author Mueller, Jens-Daniel author Proye, Aurélien author Rae, James https://orcid.org/0000-0003-3904-2526 information author Soetaert, Karline
karline.soetaert@nioz.nl
https://orcid.org/0000-0003-4603-7100 information author documentDigital Further details <gco:CharacterString>DNA sampling in the Gulf of Mexico on GOMECC-4</gco:CharacterString> https://zenodo.org/records/13102580 documentDigital Further details <gco:CharacterString>Carbon-related, hydrographic data collected during th NOAA Ship Ronald H. Brown 4th Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-4) cruise in Gulf of Mexico and North Atlantic Ocean from 2021-09-13 to 2021-10-21 (NCEI Accession 0294320)</gco:CharacterString> 2024-01-01 publication https://doi.org/10.25921/4TWF-PP50 Barbero, Leticia https://orcid.org/0000-0002-8858-5247 information author Stefanick, Andrew author Hooper, James https://orcid.org/0000-0002-1796-6800 information author Wanninkhof, Rik
rik.wanninkhof@noaa.gov
http://www.aoml.noaa.gov/about_us/staff/?lname=WANNINKHOF&fname=Richard information author Baringer, Molly O author Smith, Ian author Zhang, Jia-Zhong
jia-zhong.zhang@noaa.gov
https://orcid.org/0000-0002-1138-2556 information author Martín-Mayor, Macarena author Byrne, Robert H author Langdon, Chris https://orcid.org/0000-0002-3043-3806 information author Stauffer, Beth A author documentDigital NOAA National Centers for Environmental Information Further details <gco:CharacterString>eDNA from Gulf of Mexico Ecosystems and Carbon Cruise 2021 (GOMECC-4)</gco:CharacterString> 2024-01-01 publication https://doi.org/10.15468/SM6FPZ Silliman, Katherine author Anderson, Sean R
seanceltics34@gmail.com
author Thompson, Luke R author documentDigital United States Geological Survey