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Data Publisher for Earth & Environmental Science

Rantala, Marttiina V; Israde-Alcántara, Isabel; Safaierad, Reza; Mattielli, Nadine; Tylmann, Wojciech; Smol, John P; Grooms, Christopher; Lepoint, Gilles; Francus, Pierre; Metcalfe, Sarah; Etmański, Paweł; Fagel, Nathalie (2026): X-ray fluorescence core scanning (XRF-CS) data of a sediment core from Lake Santa Maria del Oro (Nayarit, Mexico) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.990161

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Published: 2026-06-05DOI registered: 2026-07-04

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Abstract:
X-ray fluorescence core scanning (XRF-CS) data of sediment core SMo22-1 retrieved from Lake Santa Maria del Oro in April 2022. Scans were performed with a 500 µm step size and 10 seconds dwell time. The elemental data were transformed using the centered log-ratio (clr) method and thereafter min-max normalized. The analysis yielded the ratio of Compton (incoherent) to Rayleigh (coherent) scattering (Inc/coh) that can be used as an indicator of sediment organic matter content. The measurements extend back to the late 1800s. Ages were estimated using Pb-210 dating and Bayesian age-depth modeling.
Keyword(s):
Anthropocene; biogeochemistry; Carbon accumulation; crater lake; Lake sediment; Mexico; Primary production; Tropical
Supplement to:
Rantala, Marttiina V; Israde-Alcántara, Isabel; Safaierad, Reza; Mattielli, Nadine; Tylmann, Wojciech; Smol, John P; Grooms, Christopher; Lepoint, Gilles; Francus, Pierre; Metcalfe, Sarah; Etmański, Paweł; Fagel, Nathalie (2026): Increasing lake primary production and organic carbon sequestration in tropical Mexican lakes during the past century. CATENA, 273, 110448, https://doi.org/10.1016/j.catena.2026.110448
References:
Aquino-Lopez, Marco A; Blaauw, Maarten; Christen, Andrés; Sanderson, Nicole K (2018): Bayesian Analysis of 210Pb Dating. Journal of Agricultural Biological and Environmental Statistics, 23(3), 317-333, https://doi.org/10.1007/s13253-018-0328-7
Funding:
Fonds de la Recherche Scientifique (FNRS), grant/award no. PDR T.0079.21: Holocene Mexican Crater Lakes and Climate (HolMeCl)
Coverage:
Latitude: 21.365278 * Longitude: -104.568333
Date/Time Start: 2022-04-08T00:00:00 * Date/Time End: 2022-04-08T00:00:00
Minimum DEPTH, sediment/rock: 0.0000 m * Maximum DEPTH, sediment/rock: 0.1920 m
Event(s):
LSMo22-1 * Latitude: 21.365278 * Longitude: -104.568333 * Date/Time: 2022-04-08T00:00:00 * Elevation: 750.0 m * Location: Lake Santa Maria del Oro, Nayarit, Mexico * Method/Device: Sediment corer, UWITEC
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
DEPTH, sediment/rockDepth sedmRantala, Marttiina VGeocode
AgeAgea AD/CERantala, Marttiina VBayesian age model, according to Aquino-López et al. (2018)Plum version 0.5.1 by Aquino-López et al. (2018, doi:10.1007/s13253-018-0328-7).
AGEAgeka BPRantala, Marttiina VGeocode
Silicon (centered log ratio)Si (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
Calcium (centered log ratio)Ca (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
Titanium (centered log ratio)Ti (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
Chromium (centered log ratio)Cr (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
Manganese (centered log ratio)Mn (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
Iron (centered log ratio)Fe (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
10 Nickel (centered log ratio)Ni (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
11 Copper (centered log ratio)Cu (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
12 Zinc (centered log ratio)Zn (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
13 Rubidium (centered log ratio)Rb (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
14 Strontium (centered log ratio)Sr (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
15 Zirconium (centered log ratio)Zr (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
16 Tantalum (centered log ratio)Ta (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
17 Lead (centered log ratio)Pb (CLR)Rantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, ItraxClr-transformed and min-max normalized.
18 Scattering ratio, incoherent/coherenticoh/coh scatRantala, Marttiina VX-ray fluorescence core scanner (XRF), Cox Analytical Systems, Itrax
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
5395 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Depth sed [m]

Age [a AD/CE]

Age [ka BP]

Si (CLR)

Ca (CLR)

Ti (CLR)

Cr (CLR)

Mn (CLR)

Fe (CLR)
10 
Ni (CLR)
11 
Cu (CLR)
12 
Zn (CLR)
13 
Rb (CLR)
14 
Sr (CLR)
15 
Zr (CLR)
16 
Ta (CLR)
17 
Pb (CLR)
18 
icoh/coh scat
0.00002022.2-0.0722000000.630.550.280.390.330.300.710.770.980.660.700.490.610.529.42
0.00052022.0-0.072000000
0.00102021.8-0.0718000000.870.630.420.550.350.410.400.470.720.620.700.250.630.629.51
0.00152021.6-0.0716000000.840.660.400.370.350.460.580.660.500.520.720.860.510.519.63
0.00202021.4-0.0714000000.720.660.410.250.330.430.360.630.760.800.730.650.460.579.27
0.00252021.2-0.0712000000.780.710.480.400.310.480.580.370.740.390.700.670.560.688.66
0.00302021.0-0.0710000000.640.620.400.650.380.440.490.380.670.510.680.580.640.728.33
0.00352020.8-0.0708000000.710.630.360.240.440.470.360.720.730.550.740.710.450.678.97
0.00402020.6-0.0706000000.710.680.370.560.330.390.340.570.740.670.720.620.480.569.72
0.00452020.4-0.0704000000.750.780.380.500.290.460.290.490.760.610.740.620.420.608.58
0.00502020.1-0.0701000000.840.690.430.440.340.440.390.490.690.620.720.700.250.619.40
0.00552019.9-0.0699000000.930.720.430.570.370.460.340.330.690.640.750.510.340.478.88
0.00602019.7-0.0697000000.870.760.480.470.380.510.350.070.700.530.750.770.240.679.50
0.00652019.5-0.0695000000.700.760.370.600.390.460.280.470.690.630.740.640.300.609.43
0.00702019.3-0.0693000000.780.690.470.480.370.470.340.380.620.580.720.750.310.728.92
0.00752019.1-0.0691000000.680.730.420.410.360.480.370.530.570.710.780.640.330.718.56
0.00802018.9-0.0689000000.770.790.440.650.250.380.500.480.820.350.730.530.390.698.16
0.00852018.7-0.0687000000.810.870.350.360.180.390.540.230.770.660.820.640.540.618.81
0.00902018.5-0.0685000000.780.800.400.440.250.440.380.580.710.530.770.540.360.769.23
0.00952018.2-0.0682000000.780.720.410.610.160.420.570.540.720.570.720.640.400.648.44
0.01002018.0-0.0680000000.770.820.400.190.220.530.440.550.660.530.790.740.490.779.37
0.01052017.8-0.0678000000.780.730.410.710.180.460.460.440.610.440.750.630.550.768.35
0.01102017.7-0.0677000000.550.730.560.370.210.590.560.660.700.470.760.640.570.749.20
0.01152017.5-0.0675000000.720.580.420.480.140.500.450.650.760.670.700.600.480.808.13
0.01202017.3-0.0673000000.740.630.460.710.140.550.490.640.400.490.730.730.630.779.68
0.01252017.1-0.0671000000.880.810.470.490.170.590.470.340.620.440.750.450.700.738.25
0.01302016.9-0.0669000000.710.650.360.670.100.460.450.770.690.590.690.730.440.719.31
0.01352016.8-0.0668000000.670.710.350.350.170.580.400.820.850.600.770.510.550.649.83
0.01402016.6-0.0666000000.600.650.390.610.110.470.430.620.650.750.720.800.500.748.83
0.01452016.4-0.0664000000.810.670.440.710.220.680.660.020.350.570.790.700.720.699.20
0.01502016.2-0.0662000000.610.560.350.750.120.480.520.620.760.650.640.740.500.789.26
0.01552016.0-0.0660000000.680.620.360.460.210.560.600.890.860.490.670.450.450.759.12
0.01602015.8-0.0658000000.430.680.470.500.240.620.560.750.760.600.740.560.360.808.66
0.01652015.7-0.0657000000.530.630.410.540.230.530.510.810.590.690.680.690.480.767.66
0.01702015.5-0.0655000000.310.670.560.400.290.720.750.410.750.420.760.790.730.708.23
0.01752015.3-0.0653000000.640.590.440.350.220.560.700.770.810.600.640.620.550.648.68
0.01802015.1-0.065100000
0.01852014.9-0.0649000000.770.590.330.580.170.560.610.660.680.610.660.550.520.769.83
0.01902014.7-0.0647000000.320.630.470.850.090.580.440.720.530.730.750.740.700.719.49
0.01952014.6-0.0646000000.720.590.360.740.050.480.600.580.720.700.680.710.570.608.20
0.02002014.4-0.0644000000.570.640.480.380.160.560.640.630.760.590.700.630.620.789.35
0.02052014.1-0.0641000000.640.700.350.620.200.470.440.690.820.360.680.650.510.838.82
0.02102013.9-0.0639000000.640.620.370.690.230.490.520.730.640.700.670.380.530.759.04
0.02152013.7-0.0637000000.560.690.380.730.240.440.530.810.820.330.640.670.540.659.19
0.02202013.4-0.0634000000.510.850.260.500.190.380.400.440.900.830.760.540.510.728.60
0.02252013.2-0.0632000000.580.690.460.570.220.490.650.750.710.390.760.770.550.569.21
0.02302013.0-0.0630000000.580.660.430.660.190.440.540.540.750.670.680.740.450.658.08
0.02352012.7-0.0627000000.720.680.380.370.260.460.560.680.780.610.690.620.490.638.38
0.02402012.5-0.0625000000.730.680.470.470.300.520.440.240.720.730.730.670.330.698.55
0.02452012.3-0.0623000000.800.640.490.610.390.490.320.580.730.140.670.800.480.678.79
0.02502012.0-0.0620000000.860.520.490.730.340.460.270.590.550.580.600.760.510.527.83
0.02552011.8-0.0618000000.920.390.560.600.300.460.600.620.780.650.690.800.490.118.36
0.02602011.6-0.0616000000.800.570.740.620.350.490.440.580.690.500.750.910.380.088.48
0.02652011.3-0.0613000000.840.620.620.370.360.560.400.590.800.470.890.850.130.287.70
0.02702011.1-0.0611000000.800.660.470.540.220.410.380.350.730.750.810.780.390.467.90
0.02752010.9-0.0609000000.680.730.470.300.160.530.700.640.800.570.860.560.470.599.35
0.02802010.6-0.0606000000.550.560.380.500.370.430.470.590.660.640.760.820.490.698.25
0.02852010.4-0.0604000000.700.890.150.690.510.160.550.370.530.590.900.520.460.488.97
0.02902010.2-0.060200000
0.02952009.9-0.059900000
0.03002009.7-0.0597000000.480.770.230.550.410.240.560.620.690.610.910.810.480.449.52
0.03052009.5-0.0595000000.570.760.310.470.540.390.510.540.380.900.930.810.390.188.09
0.03102009.3-0.059300000
0.03152009.1-0.059100000
0.03202008.8-0.0588000000.510.560.460.890.250.520.340.570.660.470.840.820.450.639.69
0.03252008.6-0.0586000000.620.390.540.710.240.640.470.490.670.560.680.710.630.748.65
0.03302008.4-0.0584000000.590.350.570.870.230.640.380.350.710.640.630.830.630.647.94
0.03352008.2-0.0582000000.720.450.550.730.210.640.400.570.780.570.720.760.490.407.95
0.03402008.0-0.0580000000.690.590.580.630.170.570.420.660.880.670.770.750.320.287.44
0.03452007.8-0.0578000000.880.400.800.440.230.740.380.230.880.760.720.860.280.288.31
0.03502007.5-0.0575000000.820.420.750.560.300.740.290.550.630.650.790.860.240.337.36
0.03552007.3-0.0573000000.680.650.470.540.330.490.500.770.640.680.890.960.270.058.50
0.03602007.1-0.0571000000.440.790.410.610.400.400.470.680.630.410.920.850.350.538.53
0.03652006.9-0.0569000000.790.730.460.440.410.410.510.740.700.570.860.750.120.248.23
0.03702006.7-0.0567000000.620.740.330.410.530.340.480.420.760.680.840.560.430.438.66
0.03752006.5-0.0565000000.670.680.310.530.740.360.370.440.780.460.760.560.460.298.27
0.03802006.3-0.0563000000.760.680.290.710.490.310.470.440.560.670.750.600.440.438.46
0.03852006.0-0.0560000000.670.730.350.620.450.390.500.570.650.390.830.710.340.508.39
0.03902005.8-0.0558000000.730.600.430.740.350.340.370.290.660.630.760.700.400.638.48
0.03952005.6-0.0556000000.800.690.450.430.320.410.410.290.650.850.820.760.450.368.21
0.04002005.4-0.0554000000.760.720.410.510.410.350.380.430.760.540.800.770.400.418.02
0.04052005.2-0.0552000000.570.730.470.660.410.400.450.640.760.600.850.690.290.237.97
0.04102005.1-0.0551000000.680.700.330.630.430.310.480.450.760.440.870.820.350.447.94
0.04152004.9-0.0549000000.420.770.410.610.470.390.340.410.610.680.940.750.430.459.30
0.04202004.7-0.0547000000.790.770.350.730.400.290.520.470.780.480.900.720.450.037.81
0.04252004.6-0.0546000000.670.770.420.720.400.390.570.360.620.580.890.800.470.137.96
0.04302004.4-0.0544000000.090.710.480.520.520.390.550.700.750.780.820.840.430.328.01
0.04352004.2-0.0542000000.600.630.410.660.370.410.520.500.840.860.650.780.470.108.57
0.04402004.1-0.0541000000.630.570.560.360.380.540.500.680.820.850.610.770.430.209.09
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0.04602003.4-0.0534000000.530.320.470.690.930.600.530.340.490.310.330.730.710.7510.60
0.04652003.3-0.053300000
0.04702003.1-0.053100000
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0.05601999.3-0.0493000000.180.210.540.710.310.911.000.560.540.530.330.901.000.9610.22
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0.05701998.9-0.0489000000.450.170.480.820.190.600.890.830.830.830.280.600.810.649.58
0.05751998.7-0.0487000000.590.190.580.830.160.660.700.770.890.820.230.740.650.5110.41
0.05801998.4-0.0484000000.690.010.600.610.160.680.800.880.770.780.230.730.700.799.63
0.05851998.2-0.0482000000.800.010.430.660.170.570.630.840.850.780.270.630.760.849.39
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0.06051997.2-0.047200000
0.06101997.0-0.047000000
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0.06201996.4-0.0464000000.740.870.340.560.130.350.330.500.870.550.880.790.400.488.77
0.06251996.2-0.0462000000.610.710.570.610.040.570.420.500.910.730.760.860.510.289.31
0.06301995.9-0.045900000
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0.06901992.7-0.042700000
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