Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X University of Miami Umiami http://www.miami.edu/ https://ror.org/02dgjyy92 Banister Raymond B University of Alabama https://ror.org/03xrrjk67 Arick Lindsay N Mote Marine Laboratory https://ror.org/02rkzhe22 Hall Emily R Mote Marine Laboratory https://ror.org/02rkzhe22 Muller Erinn emuller@mote.org 0000-0002-2695-2064 Mote Marine Laboratory https://ror.org/02rkzhe22 2025 Seawater carbonate chemistry and SCTLD susceptibility in nursery-reared Pseudodiploria clivosa and Orbicella faveolata genotypes dataset https://doi.org/10.1594/PANGAEA.988340 2025-12-23T09:07:01 Here, we exposed Orbicella faveolata and Pseudodiploria clivosa genotypes to wild colonies showing signs consistent with stony coral tissue loss disease (SCTLD) immediately following a 2-month long exposure to ocean warming (OW) and ocean acidification (OA) scenarios. Corals were exposed to SCTLD for 3 weeks while maintaining the environmental treatments. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Github (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-12-22. Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Banister Raymond B Arick Lindsay N Hall Emily R Muller Erinn emuller@mote.org 0000-0002-2695-2064 2025 Genotype and symbiont composition rather than environment influence susceptibility to stony coral tissue loss disease in coral restoration broodstock journal article Scientific Reports https://doi.org/10.1038/s41598-025-29292-9 GitHub - katie-eaton/Mote_2018_OfavPcli_Disease: This repository is for the 2018 Mote state funded project examining the effects of end-of-century ocean warming and acidification on SCTLD susceptibility in nursery-reared Pseudodiploria clivosa and Orbicella faveolata dataset https://github.com/katie-eaton/Mote_2018_OfavPcli_Disease Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be 0009-0006-6766-0638 Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 3636 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Study type Species, unique identification Species UID species Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Species UID Species, unique identification (Semantic URI) Species UID (Semantic URI) species Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Species UID (Semantic URI) Species, unique identification (URI) Species UID (URI) species Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Species UID (URI) Treatment Treat treatment Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Treat Genotype Genotype genotype Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Genotype Relative risk, median Median RR Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Median RR Ratio Ratio ratio Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Ratio Fragments, get disease Fragm get disease % Dimensionless Ratio ψ Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Fragm get disease [%] Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Temp [°C] Temperature, water, standard error T std e ± Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 standard error std e https://en.wikipedia.org/wiki/Standard_error Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X T std e [±] Salinity Sal salinity http://purl.obolibrary.org/obo/PATO_0085001 Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Sal Salinity, standard error Sal std e ± standard error std e https://en.wikipedia.org/wiki/Standard_error Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Sal std e [±] Oxygen, dissolved DO mg/l oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Density http://dbpedia.org/resource/Density Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X DO [mg/l] Oxygen, dissolved, standard error DO std e ± oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 dissolved http://purl.obolibrary.org/obo/PATO_0001986 standard error std e https://en.wikipedia.org/wiki/Standard_error Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X DO std e [±] Irradiance E µmol photons/m**2/s hdl:10013/epic.32440.d001 Irradiance Molar Flux Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X E [µmol photons/m**2/s] Irradiance, standard error E std e ± Irradiance standard error std e https://en.wikipedia.org/wiki/Standard_error Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X E std e [±] Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X AT [µmol/kg] Alkalinity, total, standard error AT std e ± total https://www.oxforddictionaries.com/definition/american_english/total standard error std e https://en.wikipedia.org/wiki/Standard_error Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X AT std e [±] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X DIC [µmol/kg] Carbon, inorganic, dissolved, standard error DIC std e ± carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 standard error std e https://en.wikipedia.org/wiki/Standard_error Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X DIC std e [±] pH, total scale pHT Calculated using CO2SYS Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X pHT (Calculated using CO2SYS) pH, standard error pH std e ± standard error std e https://en.wikipedia.org/wiki/Standard_error Calculated using CO2SYS Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X total scale pH std e [±] (total scale, Calculated using...) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using CO2SYS Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X pCO2water_SST_wet [µatm] (Calculated using CO2SYS) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error pCO2water_SST_wet std e ± partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 standard error std e https://en.wikipedia.org/wiki/Standard_error Calculated using CO2SYS Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X pCO2water_SST_wet std e [±] (Calculated using CO2SYS) Aragonite saturation state Omega Arg aragonite saturation state Calculated using CO2SYS Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Omega Arg (Calculated using CO2SYS) Aragonite saturation state, standard error Omega Arg std e ± aragonite saturation state standard error std e https://en.wikipedia.org/wiki/Standard_error Calculated using CO2SYS Eaton Katherine R kre31@miami.edu 0000-0002-8653-602X Omega Arg std e [±] (Calculated using CO2SYS) Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CSC flag (Calculated using seacarb afte...) pH, total scale pHT Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pHT (Calculated using seacarb afte...) Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 [µmol/kg] (Calculated using seacarb afte...) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...) Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- [µmol/kg] (Calculated using seacarb afte...) Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- [µmol/kg] (Calculated using seacarb afte...) Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg (Calculated using seacarb afte...) Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal (Calculated using seacarb afte...) CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable Animalia Benthic animals Benthos Bottles or small containers/Aquaria (<20 L) Cnidaria Laboratory experiment Laboratory strains Not applicable Ocean acidification Orbicella faveolata Other studied parameter or process Pseudodiploria clivosa Single species Temperature author10403 author10414 author107699 author107700 author114025 author114026 author21564 author22144 author22148 author22159 author22414 author22445 author24922 author27217 author28754 author29138 author29176 author32865 author34379 author39204 author48750 author50621 author51658 author55788 author56746 author59171 author59172 author59173 author69140 author88364 author88367 curlevel30 inst20253 inst21374 inst406 inst505 journal16590 journal16727 license21 method6426 method6506 param101056 param101057 param101058 param101059 param101062 param130798 param131379 param131745 param150677 param175114 param185520 param24648 param27072 param49312 param49313 param50534 param510679 param534369 param54293 param54294 param552300 param552301 param716 param717 param80114 param82111 param82364 param82365 param82366 param87073 param96278 pi48750 pi88364 project4173 ref124625 ref128879 ref137104 ref137105 ref31273 ref79258 term1073490 term1073493 term2606205 term2663825 term2698012 term37599 term37677 term38253 term38477 term38494 term38527 term38841 term38844 term38857 term38860 term38869 term38874 term39424 term39425 term40438 term40646 term41013 term42436 term42437 term43298 term43792 term43794 term43821 term43834 term43861 term43972 term43995 term44029 term44030 term48166 term49384 term49506 term73928