Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 University of Exeter https://ror.org/03yghzc09 Derjean Hélisoa Amadeus University of Exeter https://ror.org/03yghzc09 University of Plymouth http://www.plymouth.ac.uk/ https://ror.org/008n7pv89 Costello Joseph L 0000-0002-2867-1864 University of Exeter https://ror.org/03yghzc09 Ellis Robert P robert.ellis100@plymouth.ac.uk 0000-0002-3117-0075 University of Exeter https://ror.org/03yghzc09 Wilson Rod W University of Exeter https://ror.org/03yghzc09 2025 Seawater carbonate chemistry and protein oxidative damage and ubiquitination in Penaeus vannamei dataset https://doi.org/10.1594/PANGAEA.987275 2025-11-07T03:12:47 In this study, we investigated the effects of increasing environmental PCO2 (ambient, 5000 and 10,000 µatm) on metabolism, oxidative stress and protein ubiquitination (an indicator of protein degradation) in whiteleg shrimp (Penaeus vannamei). This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-11-07. Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Derjean Hélisoa Amadeus Costello Joseph L 0000-0002-2867-1864 Ellis Robert P robert.ellis100@plymouth.ac.uk 0000-0002-3117-0075 Wilson Rod W 2025 The effects of high seawater PCO2 on protein oxidative damage and ubiquitination in Penaeus vannamei journal article Journal of Experimental Biology 228(16) https://doi.org/10.1242/jeb.249906 jeb249906 Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 2025 Sanders_2025_JEB_data.xlsx dataset figshare https://doi.org/10.6084/M9.FIGSHARE.29927741.V1 Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be 0009-0006-6766-0638 Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 553 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Study type Species, unique identification Species UID species Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Species UID Species, unique identification (URI) Species UID (URI) species Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Species UID (URI) Species, unique identification (Semantic URI) Species UID (Semantic URI) species Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Species UID (Semantic URI) Treatment: partial pressure of carbon dioxide T:pCO2 µatm treatment partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 T:pCO2 [µatm] Metabolic rate of oxygen MR O2 µmol/h/g metabolic rate oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 Specific Activity http://search.ebscohost.com/login.aspx?direct=true&db=nlebk&AN=98508&site=ehost-live&ebv=EB&ppid=pp_610 Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Standard MR O2 [µmol/h/g] (Standard) Specific dynamic action, oxygen, magnitude SDA O2 mag µmol/g specific dynamic action https://en.wikipedia.org/wiki/Specific_dynamic_action oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 magnitude http://purl.obolibrary.org/obo/PATO_0002016 Molar Concentration Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 SDA O2 mag [µmol/g] Protein carbonyl, per protein mass Prot carbo/prot nmol/mg Molar Concentration Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Prot carbo/prot [nmol/mg] Intensity Intensity intensity http://purl.obolibrary.org/obo/PATO_0000049 Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 K48 Ubiquitin-conjugated protein 900 vs 10000 Intensity (K48 Ubiquitin-conjugated prot...) Intensity Intensity intensity http://purl.obolibrary.org/obo/PATO_0000049 Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 K48 Ubiquitin-conjugated protein 900 vs 5000 Intensity (K48 Ubiquitin-conjugated prot...) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 pCO2water_SST_wet [µatm] Partial pressure of carbon dioxide, standard deviation pCO2 std dev ± partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 pCO2 std dev [±] Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Temp [°C] Temperature, water, standard deviation Temp std dev ± Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Temp std dev [±] Salinity Sal salinity http://purl.obolibrary.org/obo/PATO_0085001 Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Sal Salinity, standard deviation Sal std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 Sal std dev [±] pH, NBS scale pH NBS Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 pH NBS pH, standard deviation pH std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 NBS scale pH std dev [±] (NBS scale) Alkalinity, total AT µmol/l https://en.wikipedia.org/wiki/Alkalinity total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 AT [µmol/l] Alkalinity, total, standard deviation AT std dev ± total https://www.oxforddictionaries.com/definition/american_english/total standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Sanders Trystan trystanbrett@gmail.com 0000-0002-7605-0747 AT std dev [±] Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CSC flag pH, total scale pHT Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pHT Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 [µmol/kg] Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2water_SST_wet [µatm] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2water_SST_wet [µatm] Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- [µmol/kg] Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- [µmol/kg] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 DIC [µmol/kg] Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 AT [µmol/kg] Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable Animalia Arthropoda Benthic animals Benthos Bottles or small containers/Aquaria (<20 L) Laboratory experiment Laboratory strains Not applicable Ocean acidification Other studied parameter or process Penaeus vannamei Respiration Single species author10403 author10414 author107699 author107700 author113292 author113293 author21564 author22144 author22148 author22159 author22414 author22445 author24922 author27217 author28754 author29138 author29176 author32865 author34379 author38162 author39204 author48750 author51658 author55788 author56746 author59171 author59172 author59173 author60511 author65492 author69140 curlevel30 inst1847 inst20253 inst20623 journal16590 journal8691 license21 method6426 param106327 param125247 param135754 param140705 param143493 param151033 param163056 param185520 param26954 param49312 param49313 param510679 param534368 param534369 param54293 param54294 param716 param717 param80114 param82111 param82364 param82365 param82366 param83476 param87073 param87459 param91410 pi48750 pi60511 project4173 ref124625 ref128879 ref136282 ref136283 ref31273 ref79258 term1073167 term1073490 term1073493 term1073899 term2606205 term2698012 term37602 term37764 term38253 term38477 term38494 term38841 term38844 term38857 term38860 term38869 term38874 term38876 term39424 term39425 term40646 term40960 term41013 term41287 term43298 term43821 term43834 term43972 term43995 term44030 term44032 term48166 term49384 term49506 term73928 term76787