de.pangaea.dataset987275 und dataset PANGAEA
info@pangaea.de
https://www.pangaea.de/ information pointOfContact 2026-08-26T12:13:44Z https://doi.pangaea.de/10.1594/PANGAEA.987275 <gco:CharacterString>Seawater carbonate chemistry and protein oxidative damage and ubiquitination in Penaeus vannamei</gco:CharacterString> 2025-11-07T03:12:47 publication https://doi.org/10.1594/PANGAEA.987275 Sanders, Trystan
trystanbrett@gmail.com
https://orcid.org/0000-0002-7605-0747 information author Derjean, Hélisoa Amadeus author Costello, Joseph L https://orcid.org/0000-0002-2867-1864 information author Ellis, Robert P
robert.ellis100@plymouth.ac.uk
https://orcid.org/0000-0002-3117-0075 information author Wilson, Rod W author PANGAEA
info@pangaea.de
https://www.pangaea.de/ information publisher tableDigital In this study, we investigated the effects of increasing environmental PCO2 (ambient, 5000 and 10,000 µatm) on metabolism, oxidative stress and protein ubiquitination (an indicator of protein degradation) in whiteleg shrimp (Penaeus vannamei). This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-11-07. completed Sanders, Trystan
trystanbrett@gmail.com
https://orcid.org/0000-0002-7605-0747 information principalInvestigator Yang, Yan
yangyan@xmu.edu.cn
https://orcid.org/0000-0003-4900-5606 information principalInvestigator Animalia Arthropoda Benthic animals Benthos Bottles or small containers/Aquaria (<20 L) Laboratory experiment Laboratory strains Not applicable Ocean acidification Other studied parameter or process Penaeus vannamei Respiration Single species theme <gco:CharacterString>PANGAEA Keyword List</gco:CharacterString> 1995-01-01 creation PANGAEA
info@pangaea.de
https://www.pangaea.de/ information pointOfContact OA-ICC Ocean Acidification International Coordination Centre theme <gco:CharacterString>PANGAEA Project List</gco:CharacterString> 1995-01-01 creation PANGAEA
info@pangaea.de
https://www.pangaea.de/ information pointOfContact copyright copyright CC-BY-4.0: Creative Commons Attribution 4.0 International textTable und geoscientificInformation Type of study thematicClassification Species, unique identification thematicClassification Species, unique identification (URI) thematicClassification Species, unique identification (Semantic URI) thematicClassification Treatment: partial pressure of carbon dioxide physicalMeasurement µatm µatm Metabolic rate of oxygen physicalMeasurement Standard µmol/h/g µmol/h/g Specific dynamic action, oxygen, magnitude physicalMeasurement µmol/g µmol/g Protein carbonyl, per protein mass physicalMeasurement nmol/mg nmol/mg Intensity thematicClassification K48 Ubiquitin-conjugated protein 900 vs 10000 Intensity thematicClassification K48 Ubiquitin-conjugated protein 900 vs 5000 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement µatm µatm Partial pressure of carbon dioxide, standard deviation physicalMeasurement ± ± Temperature, water physicalMeasurement °C °C Temperature, water, standard deviation physicalMeasurement ± ± Salinity thematicClassification Salinity, standard deviation physicalMeasurement ± ± pH, NBS scale thematicClassification pH, standard deviation physicalMeasurement NBS scale ± ± Alkalinity, total physicalMeasurement µmol/l µmol/l Alkalinity, total, standard deviation physicalMeasurement ± ± Carbonate system computation flag thematicClassification Calculated using seacarb after Nisumaa et al. (2010) pH, total scale thematicClassification Calculated using seacarb after Nisumaa et al. (2010) Carbon dioxide physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Fugacity of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µatm µatm Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µatm µatm Bicarbonate ion physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Carbonate ion physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Carbon, inorganic, dissolved physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Alkalinity, total physicalMeasurement Calculated using seacarb after Nisumaa et al. (2010) µmol/kg µmol/kg Aragonite saturation state thematicClassification Calculated using seacarb after Nisumaa et al. (2010) Calcite saturation state thematicClassification Calculated using seacarb after Nisumaa et al. (2010) text/tab-separated-values unknown https://doi.pangaea.de/10.1594/PANGAEA.987275?format=textfile download dataset The data set was checked for completeness, correctness, and consistency of metainformation. Validity of used methods was checked and - if applicable - precision and range of data. Related to <gco:CharacterString>The effects of high seawater PCO2 on protein oxidative damage and ubiquitination in Penaeus vannamei</gco:CharacterString> 2025-01-01 publication https://doi.org/10.1242/jeb.249906 Sanders, Trystan
trystanbrett@gmail.com
https://orcid.org/0000-0002-7605-0747 information author Derjean, Hélisoa Amadeus author Costello, Joseph L https://orcid.org/0000-0002-2867-1864 information author Ellis, Robert P
robert.ellis100@plymouth.ac.uk
https://orcid.org/0000-0002-3117-0075 information author Wilson, Rod W author documentDigital Journal of Experimental Biology 228(16) jeb249906 Source <gco:CharacterString>Sanders_2025_JEB_data.xlsx</gco:CharacterString> 2025-01-01 publication https://doi.org/10.6084/M9.FIGSHARE.29927741.V1 Sanders, Trystan
trystanbrett@gmail.com
https://orcid.org/0000-0002-7605-0747 information author documentDigital figshare References <gco:CharacterString>EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification</gco:CharacterString> 2010-01-01 publication https://doi.org/10.5194/essd-2-167-2010 Nisumaa, Anne-Marin
annemarin@gmail.com
author Pesant, Stephane
pesant@ebi.ac.uk
https://orcid.org/0000-0002-4936-5209 information author Bellerby, Richard G J
Richard.Bellerby@niva.no
http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 information author Delille, Bruno
bruno.delille@uliege.be
https://orcid.org/0000-0003-0502-8101 information author Middelburg, Jack J
jmiddelburg@nioo.knaw.nl
https://orcid.org/0000-0003-3601-9072 information author Orr, James C
j.orr@iaea.org
https://orcid.org/0000-0002-8707-7080 information author Riebesell, Ulf
uriebesell@geomar.de
https://orcid.org/0000-0002-9442-452X information author Tyrrell, Toby
t.tyrrell@noc.soton.ac.uk
author Wolf-Gladrow, Dieter A
dieter.wolf-gladrow@awi.de
https://orcid.org/0000-0001-9531-8668 information author Gattuso, Jean-Pierre
jean-pierre.gattuso@imev-mer.fr
https://orcid.org/0000-0002-4533-4114 information author documentDigital Earth System Science Data 2(2) 167-175 References <gco:CharacterString>An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal</gco:CharacterString> 2024-01-01 publication https://doi.org/10.5194/essd-16-3771-2024 Yang, Yan
yangyan@xmu.edu.cn
https://orcid.org/0000-0003-4900-5606 information author Brockmann, Patrick author Galdino, Carolina author Schindler, Uwe
uschindler@pangaea.de
https://orcid.org/0000-0002-1900-4162 information author Gazeau, Frédéric
frederic.gazeau@imev-mer.fr
https://orcid.org/0000-0001-8807-4597 information author documentDigital Earth System Science Data 16(8) 3771-3780 References <gco:CharacterString>Data compilation on the biological response to ocean acidification: an update</gco:CharacterString> 2016-01-01 publication https://doi.org/10.5194/essd-8-79-2016 Yang, Yan
yangyan@xmu.edu.cn
https://orcid.org/0000-0003-4900-5606 information author Hansson, L author Gattuso, Jean-Pierre
jean-pierre.gattuso@imev-mer.fr
https://orcid.org/0000-0002-4533-4114 information author documentDigital Earth System Science Data 8(1) 79-87 Related code / software <gco:CharacterString>seacarb: seawater carbonate chemistry with R. R package version 3.3.3</gco:CharacterString> 2024-01-01 publication https://cran.r-project.org/web/packages/seacarb/index.html Gattuso, Jean-Pierre
jean-pierre.gattuso@imev-mer.fr
https://orcid.org/0000-0002-4533-4114 information author Epitalon, Jean-Marie author Lavigne, Héloïse
hlavigne@naturalsciences.be
https://orcid.org/0009-0006-6766-0638 information author Orr, James
James.Orr@lsce.ipsl.fr
author Gentili, Bernard
bernard.gentili@orange.fr
http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php information author Hagens, Mathilde https://orcid.org/0000-0003-3980-1043 information author Hofmann, Andreas author Mueller, Jens-Daniel author Proye, Aurélien author Rae, James https://orcid.org/0000-0003-3904-2526 information author Soetaert, Karline
karline.soetaert@nioz.nl
https://orcid.org/0000-0003-4603-7100 information author documentDigital