PANGAEA_987275 Seawater carbonate chemistry and protein oxidative damage and ubiquitination in Penaeus vannamei Sanders, Trystan; Derjean, Hélisoa Amadeus; Costello, Joseph L; Ellis, Robert P; Wilson, Rod W Seawater carbonate chemistry and protein oxidative damage and ubiquitination in Penaeus vannamei 2025-11-07 PANGAEA Dataset https://doi.pangaea.de/10.1594/PANGAEA.987275 Investigator Trystan Sanders trystanbrett@gmail.com Investigator Yan Yang yangyan@xmu.edu.cn Earth Science Type of study Species, unique identification Species, unique identification (URI) Species, unique identification (Semantic URI) Treatment: partial pressure of carbon dioxide Metabolic rate of oxygen Specific dynamic action, oxygen, magnitude Protein carbonyl, per protein mass Intensity Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Partial pressure of carbon dioxide, standard deviation Temperature, water Temperature, water, standard deviation Salinity Salinity, standard deviation pH, NBS scale pH, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag pH, total scale Carbon dioxide Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Bicarbonate ion Carbonate ion Carbon, inorganic, dissolved Alkalinity, total Aragonite saturation state Calcite saturation state geoscientificInformation Animalia Arthropoda Benthic animals Benthos Bottles or small containers/Aquaria (<20 L) Laboratory experiment Laboratory strains Not applicable Ocean acidification Other studied parameter or process Penaeus vannamei Respiration Single species Calculated using seacarb after Nisumaa et al. (2010) Complete OA-ICC Ocean Acidification International Coordination Centre unrestricted CC-BY-4.0: Creative Commons Attribution 4.0 International English PANGAEA Data Publisher for Earth & Environmental Science https://www.pangaea.de/ Data Center Contact Michael Diepenbroek info@pangaea.de

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Bremen Bremen 28359 Germany online 553 data points text/tab-separated-values Sanders, Trystan; Derjean, Hélisoa Amadeus; Costello, Joseph L; Ellis, Robert P; Wilson, Rod W (2025): The effects of high seawater PCO2 on protein oxidative damage and ubiquitination in Penaeus vannamei. Journal of Experimental Biology, 228(16), jeb249906, https://doi.org/10.1242/jeb.249906 Sanders, Trystan (2025): Sanders_2025_JEB_data.xlsx [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.29927741.V1 Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010 Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024 Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

In this study, we investigated the effects of increasing environmental PCO2 (ambient, 5000 and 10,000 µatm) on metabolism, oxidative stress and protein ubiquitination (an indicator of protein degradation) in whiteleg shrimp (Penaeus vannamei). This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-11-07. ** For all details see the full metadata description at "https://doi.pangaea.de/10.1594/PANGAEA.987275"!

http://mel.xmu.edu.cn/en/ https://cran.r-project.org/web/packages/seacarb/index.html seacarb: seawater carbonate chemistry with R. R package version 3.3.3 https://doi.org/10.1242/jeb.249906 The effects of high seawater PCO2 on protein oxidative damage and ubiquitination in Penaeus vannamei https://doi.org/10.5194/essd-16-3771-2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal https://doi.org/10.5194/essd-2-167-2010 Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification https://doi.org/10.5194/essd-8-79-2016 Data compilation on the biological response to ocean acidification: an update https://doi.org/10.6084/M9.FIGSHARE.29927741.V1 Sanders_2025_JEB_data.xlsx https://en.wikipedia.org/wiki/Alkalinity Alkalinity, total https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management OA-ICC DIF 9.4 2025-11-07 2026-08-26