Ashey Jill jillashey@uri.edu University of Rhode Island https://ror.org/013ckk937 Scucchia Federica 0000-0001-7785-4758 University of Haifa https://ror.org/02f009v59 Huffmyer Ariana S University of Rhode Island https://ror.org/013ckk937 University of Washington http://www.washington.edu/ https://ror.org/00cvxb145 Putnam H M hputnam@hawaii.edu 0000-0003-2322-3269 University of Rhode Island https://ror.org/013ckk937 Mass Tali tmass@univ.haifa.ac.il University of Haifa https://ror.org/02f009v59 2025 Seawater carbonate chemistry and survival and settlement of Pocillopora acuta across temperature and OA conditions dataset https://doi.org/10.1594/PANGAEA.987162 2025-11-04T03:22:39 Here, we exposed the early life stages of Pocillopora acuta in Kāne'ohe Bay, Hawai'i, USA, a common reef-building coral throughout the Pacific, to projected ocean warming and acidification scenarios. We measured ecological, physiological, biomineralisation and molecular responses across the critical transition from larvae to newly settled recruits following 6 days of exposure to diel fluctuations in temperature and pH in Control (26.8°C–27.9°C, 7.82–7.96 pHTotal), Mid (28.4°C–29.5°C, 7.65–7.79 pHTotal) and High conditions (30.2°C–31.5°C, 7.44–7.59 pHTotal). This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from github (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-11-04. Ashey Jill jillashey@uri.edu Scucchia Federica 0000-0001-7785-4758 Huffmyer Ariana S Putnam H M hputnam@hawaii.edu 0000-0003-2322-3269 Mass Tali tmass@univ.haifa.ac.il 2025 Thermal and Acidification Gradients Reveal Tolerance Thresholds in Pocillopora acuta Recruits journal article Molecular Ecology 34(20) https://doi.org/10.1111/mec.70116 e70116 GitHub - fscucchia/Pacu_Warm_OA_Hawaii: Electronic notebook for "Thermal and Acidification Gradients Reveal Tolerance Thresholds in Pocillopora acuta Recruits" webpage https://github.com/fscucchia/Pacu_Warm_OA_Hawaii Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html -157.787 -157.787 21.434 21.434 -157.787 21.434 2022-06-11T00:00:00 2022-06-11T00:00:00 OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 Coconut_Island_OA 21.434 -157.787 2022-06-11T00:00:00 333 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Ashey Jill jillashey@uri.edu Study type Species, unique identification Species UID species Ashey Jill jillashey@uri.edu Species UID Species, unique identification (URI) Species UID (URI) species Ashey Jill jillashey@uri.edu Species UID (URI) Species, unique identification (Semantic URI) Species UID (Semantic URI) species Ashey Jill jillashey@uri.edu Species UID (Semantic URI) Treatment Treat treatment Ashey Jill jillashey@uri.edu Treat Identification ID Ashey Jill jillashey@uri.edu chamber ID (chamber) Larvae, swimming Larvae swim # larvae Abundance or Count Ashey Jill jillashey@uri.edu Larvae swim [#] Larvae, settled Larvae sett # larvae Abundance or Count Ashey Jill jillashey@uri.edu Larvae sett [#] Larvae, alive Larvae alive # larvae alive http://purl.obolibrary.org/obo/PATO_0001421 Abundance or Count Ashey Jill jillashey@uri.edu swimming + settlers Larvae alive [#] (swimming + settlers) Settlement Settlem % Dimensionless Ratio ψ Ashey Jill jillashey@uri.edu settle capacity=settled primary polyps relative to the swimming larvae + settled primary polyps alive Settlem [%] (settle capacity=settled prima...) Salinity Sal salinity http://purl.obolibrary.org/obo/PATO_0085001 Ashey Jill jillashey@uri.edu Sal Salinity, standard error Sal std e ± standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu Sal std e [±] Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Ashey Jill jillashey@uri.edu Temp [°C] Temperature, water, standard error T std e ± Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu T std e [±] pH, total scale pHT Ashey Jill jillashey@uri.edu pHT pH, standard error pH std e ± standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu total scale pH std e [±] (total scale) Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Ashey Jill jillashey@uri.edu CO2 [µmol/kg] Carbon dioxide, standard error CO2 std e ± carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu CO2 std e [±] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Ashey Jill jillashey@uri.edu pCO2water_SST_wet [µatm] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error pCO2water_SST_wet std e ± partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu pCO2water_SST_wet std e [±] Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Ashey Jill jillashey@uri.edu [HCO3]- [µmol/kg] Bicarbonate ion, standard error [HCO3]- std e ± standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu [HCO3]- std e [±] Carbonate ion [CO3]2- µmol/kg Molar Concentration Ashey Jill jillashey@uri.edu [CO3]2- [µmol/kg] Carbonate ion, standard error [CO3]2- std e ± standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu [CO3]2- std e [±] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Ashey Jill jillashey@uri.edu DIC [µmol/kg] Carbon, inorganic, dissolved, standard error DIC std e ± carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu DIC std e [±] Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Ashey Jill jillashey@uri.edu AT [µmol/kg] Alkalinity, total, standard error AT std e ± total https://www.oxforddictionaries.com/definition/american_english/total standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu AT std e [±] Aragonite saturation state Omega Arg aragonite saturation state Ashey Jill jillashey@uri.edu Omega Arg Aragonite saturation state, standard error Omega Arg std e ± aragonite saturation state standard error std e https://en.wikipedia.org/wiki/Standard_error Ashey Jill jillashey@uri.edu Omega Arg std e [±] Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CSC flag Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 [µmol/kg] Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2water_SST_wet [µatm] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2water_SST_wet [µatm] Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- [µmol/kg] Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- [µmol/kg] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 DIC [µmol/kg] Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable Animalia Cnidaria Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Gene expression (incl. proteomics) Laboratory experiment Mortality/Survival North Pacific Pelagos Pocillopora acuta Reproduction Single species Temperature Tropical Zooplankton author10403 author10414 author107699 author107700 author113247 author113248 author21564 author22144 author22148 author22159 author22414 author22445 author24922 author27217 author28754 author29138 author29176 author32865 author34379 author39204 author48750 author51658 author51837 author55788 author56746 author59171 author59172 author59173 author69140 author73697 author84636 curlevel30 event3305110 geocode1599 geocode1600 geocode1601 inst124 inst20253 inst20641 inst413 journal11393 journal16590 license21 method6426 param101056 param101057 param101058 param101059 param101061 param101062 param101064 param101065 param130798 param131745 param132197 param132199 param135684 param184749 param185520 param49312 param49313 param510679 param534369 param54293 param54294 param7056 param716 param717 param80114 param82111 param82364 param82365 param82366 param87073 param96278 pi113247 pi48750 project4173 ref124625 ref128879 ref135937 ref135938 ref31273 ref79258 term1073490 term1073493 term1079566 term2606205 term2698012 term37599 term37606 term37647 term37677 term38253 term38477 term38527 term38841 term38845 term38851 term38856 term38858 term38860 term38874 term38886 term38895 term40646 term41013 term41036 term43298 term43651 term43794 term43821 term43834 term43972 term43997 term44025 term44030 term48166 term49384 term49506