Citation:

PANGAEA.986032

Name: Seawater carbonate chemistry and developmental states and their diameter of reef-building coral Acropora gemmifera
Published: 2025-09-23
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Acropora gemmifera; Animalia; Benthic animals; Benthos; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Development; Gene expression (incl. proteomics); Growth/Morphology; Laboratory experiment; North Pacific; Other studied parameter or process; Pelagos; Single species; Tropical; Zooplankton

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Published: 2025-09-23 • DOI registered: 2025-10-22

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Abstract:

To elucidate how reef-building corals respond and/or resist to OA, three levels of pCO2 (350.06 ± 30.67, 818.93 ± 76.09, 1694.92 ± 105.77 μatm) were used to mimic OA in ambient seawater to culture A.gemmifera larvae and juveniles. Developmental states and growth were recorded and gene expression were compared between corals in the three treatments at 3 days post-settlement (d p.s.) (short-term) and 40 d p.s. (long-term).

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-09-23.

Keyword(s):

Acropora gemmifera; Animalia; Benthic animals; Benthos; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Development; Gene expression (incl. proteomics); Growth/Morphology; Laboratory experiment; North Pacific; Other studied parameter or process; Pelagos; Single species; Tropical; Zooplankton

Related to:

Guo, Minglan; Yuan, Tao; Jiang, Lei; Zhou, Guowei; Huang, Hui (2025): Acclimation mechanisms of reef-building coral Acropora gemmifera juveniles to long-term CO2-driven ocean acidification. Scientific Reports, 15(1), 30655, https://doi.org/10.1038/s41598-025-15145-y

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 18.200000 * Longitude: 109.466700

Event(s):

Luhuitou_reef_OA * Latitude: 18.200000 * Longitude: 109.466700 * Method/Device: Experiment (EXP)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Guo, Minglan
2	Species, unique identification	Species UID		Guo, Minglan
3	Species, unique identification (URI)	Species UID (URI)		Guo, Minglan
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Guo, Minglan
5	Treatment: pH	T:pH		Guo, Minglan
6	State	State		Guo, Minglan		Developmental, day 1
7	Diameter	Ø	µm	Guo, Minglan		day 1
8	State	State		Guo, Minglan		Developmental, day 2
9	Diameter	Ø	µm	Guo, Minglan		day 2
10	State	State		Guo, Minglan		Developmental, day 3
11	Diameter	Ø	µm	Guo, Minglan		day 3
12	State	State		Guo, Minglan		Developmental, day 4
13	Diameter	Ø	µm	Guo, Minglan		day 4
14	State	State		Guo, Minglan		Developmental, day 5
15	Diameter	Ø	µm	Guo, Minglan		day 5
16	State	State		Guo, Minglan		Developmental, day 6
17	Diameter	Ø	µm	Guo, Minglan		day 6
18	State	State		Guo, Minglan		Developmental, day 7
19	Diameter	Ø	µm	Guo, Minglan		day 7
20	State	State		Guo, Minglan		Developmental, day 8
21	Diameter	Ø	µm	Guo, Minglan		day 8
22	State	State		Guo, Minglan		Developmental, day 9
23	Diameter	Ø	µm	Guo, Minglan		day 9
24	State	State		Guo, Minglan		Developmental, day 11
25	Diameter	Ø	µm	Guo, Minglan		day 11
26	State	State		Guo, Minglan		Developmental, day 13
27	Diameter	Ø	µm	Guo, Minglan		day 13
28	State	State		Guo, Minglan		Developmental, day 15
29	Diameter	Ø	µm	Guo, Minglan		day 15
30	State	State		Guo, Minglan		Developmental, day 17
31	Diameter	Ø	µm	Guo, Minglan		day 17
32	State	State		Guo, Minglan		Developmental, day 19
33	Diameter	Ø	µm	Guo, Minglan		day 19
34	State	State		Guo, Minglan		Developmental, day 21
35	Diameter	Ø	µm	Guo, Minglan		day 21
36	State	State		Guo, Minglan		Developmental, day 22
37	Diameter	Ø	µm	Guo, Minglan		day 22
38	State	State		Guo, Minglan		Developmental, day 24
39	Diameter	Ø	µm	Guo, Minglan		day 24
40	State	State		Guo, Minglan		Developmental, day 26
41	Diameter	Ø	µm	Guo, Minglan		day 26
42	State	State		Guo, Minglan		Developmental, day 28
43	Diameter	Ø	µm	Guo, Minglan		day 28
44	pH, NBS scale	pH NBS		Guo, Minglan
45	pH, standard deviation	pH std dev	±	Guo, Minglan
46	Salinity	Sal		Guo, Minglan
47	Salinity, standard deviation	Sal std dev	±	Guo, Minglan
48	Alkalinity, total	AT	µmol/kg	Guo, Minglan
49	Alkalinity, total, standard deviation	AT std dev	±	Guo, Minglan
50	Carbon, inorganic, dissolved	DIC	µmol/kg	Guo, Minglan
51	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Guo, Minglan
52	Bicarbonate ion	[HCO3]-	µmol/kg	Guo, Minglan
53	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Guo, Minglan
54	Carbonate ion	[CO3]2-	µmol/kg	Guo, Minglan
55	Carbonate ion, standard deviation	[CO3]2- std dev	±	Guo, Minglan
56	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Guo, Minglan
57	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Guo, Minglan
58	Aragonite saturation state	Omega Arg		Guo, Minglan
59	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Guo, Minglan
60	Temperature, water	Temp	°C	Guo, Minglan		input
61	Temperature, water	Temp	°C	Guo, Minglan		output
62	Temperature, water, standard deviation	Temp std dev	±	Guo, Minglan		output
63	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
64	pH, total scale	pHT		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
65	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
66	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
67	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
68	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
69	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
70	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
71	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
72	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

31500 data points

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