Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Grillo, Ana C; Simancas-Giraldo, Susana Marcela; Steinel, Nico; Longhini, Cybelle M; Soares, Marcelo Oliveira; Bejarano, Sonia; Longo, G O (2025): Seawater carbonate chemistry and competition between soft coral (Xenia) and hard coral (Stylophora pistillata) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.985075

Always quote citation above when using data! You can download the citation in several formats below.

Published: 2025-09-16DOI registered: 2025-10-15

RIS CitationBibTeX Citation Share

Abstract:
We conducted a 28-day laboratory orthogonal experiment to test if acidification (950 µatm pCO2) and moderate to high nitrate enrichment (4 and 8 µmolL−1) negatively affect the hard coral Stylophora pistillata while physically competing with the soft coral Xenia spp. We measured photosynthetic efficiency (PE) in hard corals and growth rate, Symbiodiniaceae density, and chlorophyll-a concentration in both hard and soft corals as proxies for their condition and responses to competition.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from James Cook University (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-09-16.
Keyword(s):
Animalia; Benthic animals; Benthos; Calcification/Dissolution; Cnidaria; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Laboratory strains; Macro-nutrients; Not applicable; Other studied parameter or process; Primary production/Photosynthesis; Species interaction; Stylophora pistillata; Xenia sp.
Related to:
Grillo, Ana C; Simancas-Giraldo, Susana Marcela; Steinel, Nico; Longhini, Cybelle M; Soares, Marcelo Oliveira; Bejarano, Sonia; Longo, G O (2025): Ocean acidification and nitrate enrichment can mitigate negative effects of soft coral (Xenia) competition on hard coral (Stylophora pistillata) endosymbionts. Scientific Reports, 15(1), 29937, https://doi.org/10.1038/s41598-025-15683-5
Source:
Grillo Monteiro, Ana; Ortigara Longo, Guilherme; Hoogenboom, Mia (2025): Data for: Ocean acidification and nitrate enrichment on competition between hard and soft corals [dataset]. James Cook University, https://doi.org/10.25903/YJHM-DB37
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2019): seacarb: Seawater Carbonate Chemistry. R package version 3.2.15. https://CRAN.R-project.org/package=seacarb
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeGrillo, Ana C
2SpeciesSpeciesGrillo, Ana C
3Time point, descriptiveTime pointGrillo, Ana CT0=at the begining and TF=end of the experiment
4IdentificationIDGrillo, Ana Cexperimental tanks
5TreatmentTreatGrillo, Ana C
6IdentificationIDGrillo, Ana Ccoral fragments
7TreatmentTreatGrillo, Ana Ccompetition(no contact: not contacting the soft coral, contact: contacting the soft coral)
8Photosynthetic efficiencyFv/FmGrillo, Ana Cmeasurements on section of hard corals not contacted by soft coral
9Photosynthetic efficiencyFv/FmGrillo, Ana Cmeasurements on section of hard corals contacted by soft coral
10MassMassgGrillo, Ana Chard corals at the begining and end of experiment
11MassMassgGrillo, Ana Cdifference between beginning and end of experiment
12Calcification rateCalc ratemg/dayGrillo, Ana C
13SectionSectGrillo, Ana Ccoral fragment from where zooxanthellae were extracted: control (sections not contacting the soft coral), contact (sections contacting the soft coral)
14SymbiodiniaceaeSymbiodiniaceae#/cm2Grillo, Ana C
15Chlorophyll aChl aµg/cm2Grillo, Ana C
16AreaAreacm2Grillo, Ana Ccover
17AreaAreacm2Grillo, Ana Ccover, growth difference between beginning and end of experiment
18Growth rateµmm2/dayGrillo, Ana C
19Temperature, waterTemp°CGrillo, Ana C
20Temperature, water, standard errorT std e±Grillo, Ana C
21SalinitySalGrillo, Ana C
22Salinity, standard errorSal std e±Grillo, Ana C
23pH, NBS scalepH NBSGrillo, Ana CPotentiometric
24pH, standard errorpH std e±Grillo, Ana CPotentiometric
25Nitrate[NO3]-µmol/lGrillo, Ana C
26Nitrate, standard errorNO3 std e±Grillo, Ana C
27Alkalinity, totalATµmol/kgGrillo, Ana CSpectrophotometric
28Alkalinity, total, standard errorAT std e±Grillo, Ana CSpectrophotometric
29Phosphate[PO4]3-µmol/kgGrillo, Ana C
30Phosphate, standard errorPO4 std e±Grillo, Ana C
31SilicateSi(OH)4µmol/kgGrillo, Ana C
32Silicate, standard errorSi(OH)4 std e±Grillo, Ana C
33Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmGrillo, Ana CCalculated using CO2SYS
34Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Grillo, Ana CCalculated using CO2SYS
35Carbonate ion[CO3]2-µmol/kgGrillo, Ana CCalculated using CO2SYS
36Carbonate ion, standard error[CO3]2- std e±Grillo, Ana CCalculated using CO2SYS
37Bicarbonate ion[HCO3]-µmol/kgGrillo, Ana CCalculated using CO2SYS
38Bicarbonate ion, standard error[HCO3]- std e±Grillo, Ana CCalculated using CO2SYS
39Carbon dioxideCO2µmol/kgGrillo, Ana CCalculated using CO2SYS
40Carbon dioxide, standard errorCO2 std e±Grillo, Ana CCalculated using CO2SYS
41Aragonite saturation stateOmega ArgGrillo, Ana CCalculated using CO2SYS
42Aragonite saturation state, standard errorOmega Arg std e±Grillo, Ana CCalculated using CO2SYS
43Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Size:
28133 data points

Download Data

Download dataset as tab-delimited text — use the following character encoding:

View dataset as HTML (shows only first 2000 rows)