Cane, Jasmine S; Yasutake, Yogi C; McMahon, Shannon J; Hoey, Andrew S; Donelson, Jennifer M (2025): Seawater carbonate chemistry and juvenile development of a coral reef fish [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.984840
Always quote citation above when using data! You can download the citation in several formats below.
Published: 2025-09-11 • DOI registered: 2025-10-22
Abstract:
Here, we investigated how projected ocean warming (+1.5°C) during grandparental (F1) and parental (F2) generations of the spiny chromis damselfish (Acanthochromis polyacanthus), influences the sensitivity of F3 juveniles to ocean warming (present-day vs +1.5°C) and/or elevated CO2 (490 μatm vs 825 μatm). After 16 weeks of exposure, aerobic physiology (resting oxygen consumption, maximum oxygen consumption, and absolute aerobic scope), behaviour (boldness and activity), and growth (length and physical condition) were measured in F3 juveniles and the relationships between these performance traits was explored.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from James Cook University (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-09-10.
Keyword(s):
Related to:
Cane, Jasmine S; Yasutake, Yogi C; McMahon, Shannon J; Hoey, Andrew S; Donelson, Jennifer M (2025): The influence of cross-generational warming on the juvenile development of a coral reef fish under ocean warming and acidification. Marine Environmental Research, 211, 107451, https://doi.org/10.1016/j.marenvres.2025.107451
Source:
Cane, Jasmine S; Yasutake, Yogi C; McMahon, Shannon J; Hoey, Andrew S; Donelson, Jennifer M (2025): Data from: The influence of cross-generational warming on the juvenile development of a coral reef fish under ocean warming and acidification [dataset]. James Cook University, https://doi.org/10.25903/MCKS-T205
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Coverage:
Median Latitude: -18.550000 * Median Longitude: 146.633335 * South-bound Latitude: -18.700000 * West-bound Longitude: 146.600000 * North-bound Latitude: -18.400000 * East-bound Longitude: 146.666670
Date/Time Start: 2015-07-01T00:00:00 * Date/Time End: 2015-07-31T00:00:00
Event(s):
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Type of study | Study type | Cane, Jasmine S | |||
| 2 | Species, unique identification | Species UID | Cane, Jasmine S | |||
| 3 | Species, unique identification (URI) | Species UID (URI) | Cane, Jasmine S | |||
| 4 | Species, unique identification (Semantic URI) | Species UID (Semantic URI) | Cane, Jasmine S | |||
| 5 | Identification | ID | Cane, Jasmine S | tank number the F3 juveniles were reared/developed in | ||
| 6 | Fish | Fish | # | Cane, Jasmine S | sampled from the same tank | |
| 7 | Identification | ID | Cane, Jasmine S | F2 adult pairs, used as identification number of cross-generation breeding pairs | ||
| 8 | Identification | ID | Cane, Jasmine S | Female (maternal; F2) family linage identification number | ||
| 9 | Identification | ID | Cane, Jasmine S | Male (paternal; F2) family linage identification number | ||
| 10 | Identification | ID | Cane, Jasmine S | Combined Grandfather and grandmother (F1) family linage code letters for the mother (F2) | ||
| 11 | Identification | ID | Cane, Jasmine S | Maternal (F2) Grandfather (F1) family linage code (A-F) | ||
| 12 | Identification | ID | Cane, Jasmine S | Maternal (F2) Grandmother (F1) family linage code (A-F) | ||
| 13 | Identification | ID | Cane, Jasmine S | Combined Grandfather and grandmother (F1) family linage code letters for the father (F2) | ||
| 14 | Identification | ID | Cane, Jasmine S | Paternal (F2) Grandfather (F1) family linage code (A-F) | ||
| 15 | Identification | ID | Cane, Jasmine S | Paternal (F2) Grandmother (F1) family linage code (A-F) | ||
| 16 | Treatment | Treat | Cane, Jasmine S | Cross-generation code (CCCC = Control, CCCH = Parental development, CCHC = Grandparent post-maturation; HHCC = Grandparental development; HHHC = Continuous grandparent) | ||
| 17 | Date | Date | Cane, Jasmine S | move from parental tank to juvenile treatmnet (day of hatch or the day after hatch if less than half of the clutch emerged from their egg) | ||
| 18 | Date | Date | Cane, Jasmine S | respirometry test | ||
| 19 | Date | Date | Cane, Jasmine S | death/euthanasia | ||
| 20 | Age | Age | days | Cane, Jasmine S | Date of move - date of death | |
| 21 | Treatment | Treat | Cane, Jasmine S | CO2 | ||
| 22 | Treatment | Treat | Cane, Jasmine S | Temperature | ||
| 23 | Body length | BL | mm | Cane, Jasmine S | standard | |
| 24 | Mass | Mass | g | Cane, Jasmine S | indervidual fish | |
| 25 | Time of day | Time of day | Cane, Jasmine S | |||
| 26 | Identification | ID | Cane, Jasmine S | Respirometry chamber | ||
| 27 | Mass | Mass | g | Cane, Jasmine S | taken before respirometry measures (patted dry and alive) | |
| 28 | Oxygen consumption | O2 con | mg/kg/h | Cane, Jasmine S | resting | |
| 29 | Mass | Mass | kg | Cane, Jasmine S | RMR | |
| 30 | Wet mass | Wet m | g | Cane, Jasmine S | taken before respirometry measures (patted dry and alive) | |
| 31 | Oxygen consumption | O2 con | mg/kg/h | Cane, Jasmine S | maximum | |
| 32 | Aerobic scope of oxygen | Aerobic scope | mg/kg/h | Cane, Jasmine S | ||
| 33 | Mass | Mass | kg | Cane, Jasmine S | MMR | |
| 34 | Mass | Mass | kg | Cane, Jasmine S | AS | |
| 35 | Date | Date | Cane, Jasmine S | behaviour trail took place | ||
| 36 | Identification | ID | Cane, Jasmine S | gopro camera used for that video | ||
| 37 | Identification | ID | Cane, Jasmine S | Video | ||
| 38 | Time in seconds | Time sec | s | Cane, Jasmine S | from the circular tube was removal, to when the juvenile completely emerged (whole body is visible) from the shelter/tunnel | |
| 39 | Time in minutes | Time min | min | Cane, Jasmine S | from the circular tube was removal, to when the juvenile completely emerged (whole body is visible) from the shelter/tunnel | |
| 40 | Score | Score | Cane, Jasmine S | Behaviour (boldness and activity) | ||
| 41 | Temperature, water | Temp | °C | Cane, Jasmine S | F3 juvenile treatment | |
| 42 | Temperature, water, standard deviation | Temp std dev | ± | Cane, Jasmine S | F3 juvenile treatment | |
| 43 | Alkalinity, total | AT | µmol/kg | Cane, Jasmine S | F3 juvenile treatment | |
| 44 | Alkalinity, total, standard deviation | AT std dev | ± | Cane, Jasmine S | F3 juvenile treatment | |
| 45 | pH, total scale | pHT | Cane, Jasmine S | F3 juvenile treatment | ||
| 46 | pH, standard deviation | pH std dev | ± | Cane, Jasmine S | F3 juvenile treatment | |
| 47 | Salinity | Sal | Cane, Jasmine S | lower, F3 juvenile treatment | ||
| 48 | Salinity | Sal | Cane, Jasmine S | upper, F3 juvenile treatment | ||
| 49 | Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) | pCO2water_SST_wet | µatm | Cane, Jasmine S | Calculated using CO2SYS | salinity 34.5, F3 juvenile treatment |
| 50 | Partial pressure of carbon dioxide, standard deviation | pCO2 std dev | ± | Cane, Jasmine S | Calculated using CO2SYS | F3 juvenile treatment |
| 51 | Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) | pCO2water_SST_wet | µatm | Cane, Jasmine S | Calculated using CO2SYS | salinity 36, F3 juvenile treatment |
| 52 | Partial pressure of carbon dioxide, standard deviation | pCO2 std dev | ± | Cane, Jasmine S | Calculated using CO2SYS | F3 juvenile treatment |
| 53 | Carbonate system computation flag | CSC flag | Cane, Jasmine S | |||
| 54 | Carbon dioxide | CO2 | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | lower salinity, F3 juvenile treatment |
| 55 | Fugacity of carbon dioxide (water) at sea surface temperature (wet air) | fCO2water_SST_wet | µatm | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | lower salinity, F3 juvenile treatment |
| 56 | Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) | pCO2water_SST_wet | µatm | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | lower salinity, F3 juvenile treatment |
| 57 | Bicarbonate ion | [HCO3]- | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | lower salinity, F3 juvenile treatment |
| 58 | Carbonate ion | [CO3]2- | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | lower salinity, F3 juvenile treatment |
| 59 | Carbon, inorganic, dissolved | DIC | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | lower salinity, F3 juvenile treatment |
| 60 | Aragonite saturation state | Omega Arg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | lower salinity, F3 juvenile treatment | |
| 61 | Calcite saturation state | Omega Cal | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | lower salinity, F3 juvenile treatment | |
| 62 | Carbon dioxide | CO2 | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | upper salinity, F3 juvenile treatment |
| 63 | Fugacity of carbon dioxide (water) at sea surface temperature (wet air) | fCO2water_SST_wet | µatm | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | upper salinity, F3 juvenile treatment |
| 64 | Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) | pCO2water_SST_wet | µatm | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | upper salinity, F3 juvenile treatment |
| 65 | Bicarbonate ion | [HCO3]- | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | upper salinity, F3 juvenile treatment |
| 66 | Carbonate ion | [CO3]2- | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | upper salinity, F3 juvenile treatment |
| 67 | Carbon, inorganic, dissolved | DIC | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | upper salinity, F3 juvenile treatment |
| 68 | Aragonite saturation state | Omega Arg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | upper salinity, F3 juvenile treatment | |
| 69 | Calcite saturation state | Omega Cal | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | upper salinity, F3 juvenile treatment |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
215698 data points
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